Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05523 and H281DRAFT_05524 are separated by 38 nucleotides H281DRAFT_05524 and H281DRAFT_05525 are separated by 559 nucleotides
H281DRAFT_05523: H281DRAFT_05523 - propionyl-CoA synthetase (EC 6.2.1.17), at 105,645 to 107,591
_05523
H281DRAFT_05524: H281DRAFT_05524 - Amidases related to nicotinamidase, at 107,630 to 108,103
_05524
H281DRAFT_05525: H281DRAFT_05525 - Short-chain dehydrogenases of various substrate specificities, at 108,663 to 109,538
_05525
Position (kb) 107
108
109 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 106.945 kb on + strand, within H281DRAFT_05523 at 106.986 kb on - strand, within H281DRAFT_05523 at 107.052 kb on + strand, within H281DRAFT_05523 at 107.089 kb on - strand, within H281DRAFT_05523 at 107.398 kb on + strand at 107.450 kb on - strand at 107.481 kb on - strand at 107.521 kb on + strand at 107.705 kb on + strand, within H281DRAFT_05524 at 107.759 kb on - strand, within H281DRAFT_05524 at 107.840 kb on + strand, within H281DRAFT_05524 at 107.884 kb on + strand, within H281DRAFT_05524 at 108.035 kb on + strand, within H281DRAFT_05524 at 108.035 kb on + strand, within H281DRAFT_05524 at 108.103 kb on + strand at 108.104 kb on - strand at 108.104 kb on - strand at 108.155 kb on + strand at 108.156 kb on - strand at 108.156 kb on - strand at 108.237 kb on + strand at 108.238 kb on - strand at 108.238 kb on - strand at 108.238 kb on - strand at 108.290 kb on - strand at 108.394 kb on - strand at 108.398 kb on - strand at 108.398 kb on - strand at 108.432 kb on + strand at 108.433 kb on - strand at 108.471 kb on + strand at 108.472 kb on - strand at 108.472 kb on - strand at 108.541 kb on + strand at 108.542 kb on - strand at 108.542 kb on - strand at 108.744 kb on + strand at 108.763 kb on + strand, within H281DRAFT_05525 at 108.763 kb on + strand, within H281DRAFT_05525 at 108.764 kb on - strand, within H281DRAFT_05525 at 108.908 kb on + strand, within H281DRAFT_05525 at 108.908 kb on + strand, within H281DRAFT_05525 at 108.909 kb on - strand, within H281DRAFT_05525 at 108.909 kb on - strand, within H281DRAFT_05525 at 108.909 kb on - strand, within H281DRAFT_05525 at 108.916 kb on + strand, within H281DRAFT_05525 at 108.917 kb on - strand, within H281DRAFT_05525 at 109.067 kb on + strand, within H281DRAFT_05525 at 109.068 kb on - strand, within H281DRAFT_05525 at 109.068 kb on - strand, within H281DRAFT_05525 at 109.078 kb on + strand, within H281DRAFT_05525 at 109.079 kb on - strand, within H281DRAFT_05525
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 106,945 + H281DRAFT_05523 0.67 +0.6 106,986 - H281DRAFT_05523 0.69 -1.4 107,052 + H281DRAFT_05523 0.72 +0.8 107,089 - H281DRAFT_05523 0.74 +0.9 107,398 + +0.9 107,450 - +1.0 107,481 - -0.3 107,521 + -0.3 107,705 + H281DRAFT_05524 0.16 -0.6 107,759 - H281DRAFT_05524 0.27 -0.3 107,840 + H281DRAFT_05524 0.44 -0.0 107,884 + H281DRAFT_05524 0.54 +0.8 108,035 + H281DRAFT_05524 0.85 -1.0 108,035 + H281DRAFT_05524 0.85 -0.4 108,103 + -0.9 108,104 - +2.3 108,104 - +0.5 108,155 + +0.4 108,156 - +1.1 108,156 - -0.6 108,237 + +2.0 108,238 - +0.0 108,238 - +0.3 108,238 - +0.1 108,290 - +0.5 108,394 - -1.9 108,398 - -0.5 108,398 - -1.4 108,432 + +1.3 108,433 - +1.2 108,471 + -0.4 108,472 - +0.6 108,472 - -0.9 108,541 + -1.7 108,542 - -0.4 108,542 - +0.1 108,744 + +0.4 108,763 + H281DRAFT_05525 0.11 +1.1 108,763 + H281DRAFT_05525 0.11 -0.9 108,764 - H281DRAFT_05525 0.12 -0.2 108,908 + H281DRAFT_05525 0.28 +1.1 108,908 + H281DRAFT_05525 0.28 +0.3 108,909 - H281DRAFT_05525 0.28 -0.4 108,909 - H281DRAFT_05525 0.28 +2.9 108,909 - H281DRAFT_05525 0.28 -0.5 108,916 + H281DRAFT_05525 0.29 +0.0 108,917 - H281DRAFT_05525 0.29 +0.1 109,067 + H281DRAFT_05525 0.46 -0.0 109,068 - H281DRAFT_05525 0.46 +0.8 109,068 - H281DRAFT_05525 0.46 +0.9 109,078 + H281DRAFT_05525 0.47 -1.0 109,079 - H281DRAFT_05525 0.47 -0.1
Or see this region's nucleotide sequence