Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05253

Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05252 and H281DRAFT_05253 are separated by 0 nucleotidesH281DRAFT_05253 and H281DRAFT_05254 overlap by 17 nucleotides H281DRAFT_05252: H281DRAFT_05252 - amino acid adenylation domain-containing protein, at 221,164 to 222,837 _05252 H281DRAFT_05253: H281DRAFT_05253 - Acyl carrier protein, at 222,838 to 223,098 _05253 H281DRAFT_05254: H281DRAFT_05254 - Lysophospholipase, at 223,082 to 224,998 _05254 Position (kb) 222 223 224Strain fitness (log2 ratio) -3 -2 -1 0 1at 221.879 kb on - strand, within H281DRAFT_05252at 221.905 kb on + strand, within H281DRAFT_05252at 222.103 kb on - strand, within H281DRAFT_05252at 222.386 kb on - strand, within H281DRAFT_05252at 222.768 kb on - strandat 222.921 kb on - strand, within H281DRAFT_05253at 222.923 kb on - strand, within H281DRAFT_05253at 223.516 kb on - strand, within H281DRAFT_05254at 223.548 kb on - strand, within H281DRAFT_05254at 223.551 kb on + strand, within H281DRAFT_05254at 223.551 kb on + strand, within H281DRAFT_05254at 223.576 kb on + strand, within H281DRAFT_05254at 223.577 kb on - strand, within H281DRAFT_05254at 223.821 kb on - strand, within H281DRAFT_05254at 223.866 kb on - strand, within H281DRAFT_05254at 223.870 kb on + strand, within H281DRAFT_05254

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
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221,879 - H281DRAFT_05252 0.43 +0.1
221,905 + H281DRAFT_05252 0.44 +1.7
222,103 - H281DRAFT_05252 0.56 +0.6
222,386 - H281DRAFT_05252 0.73 -1.7
222,768 - -0.1
222,921 - H281DRAFT_05253 0.32 -1.1
222,923 - H281DRAFT_05253 0.33 -0.0
223,516 - H281DRAFT_05254 0.23 +0.6
223,548 - H281DRAFT_05254 0.24 -0.7
223,551 + H281DRAFT_05254 0.24 -2.9
223,551 + H281DRAFT_05254 0.24 -0.7
223,576 + H281DRAFT_05254 0.26 +0.4
223,577 - H281DRAFT_05254 0.26 +0.4
223,821 - H281DRAFT_05254 0.39 +1.2
223,866 - H281DRAFT_05254 0.41 +0.1
223,870 + H281DRAFT_05254 0.41 +0.9

Or see this region's nucleotide sequence