Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05148 and H281DRAFT_05149 are separated by 6 nucleotides H281DRAFT_05149 and H281DRAFT_05150 are separated by 242 nucleotides
H281DRAFT_05148: H281DRAFT_05148 - DNA polymerase, at 101,607 to 103,085
_05148
H281DRAFT_05149: H281DRAFT_05149 - putative DNA modification/repair radical SAM protein, at 103,092 to 104,306
_05149
H281DRAFT_05150: H281DRAFT_05150 - 2'-5' RNA ligase, at 104,549 to 105,154
_05150
Position (kb) 103
104
105 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 102.422 kb on - strand, within H281DRAFT_05148 at 102.424 kb on + strand, within H281DRAFT_05148 at 102.501 kb on - strand, within H281DRAFT_05148 at 102.504 kb on + strand, within H281DRAFT_05148 at 102.504 kb on + strand, within H281DRAFT_05148 at 102.504 kb on + strand, within H281DRAFT_05148 at 102.504 kb on + strand, within H281DRAFT_05148 at 102.505 kb on - strand, within H281DRAFT_05148 at 102.505 kb on - strand, within H281DRAFT_05148 at 102.634 kb on + strand, within H281DRAFT_05148 at 102.635 kb on - strand, within H281DRAFT_05148 at 102.716 kb on + strand, within H281DRAFT_05148 at 103.098 kb on + strand at 103.098 kb on + strand at 103.098 kb on + strand at 103.243 kb on + strand, within H281DRAFT_05149 at 103.244 kb on - strand, within H281DRAFT_05149 at 103.244 kb on - strand, within H281DRAFT_05149 at 103.478 kb on - strand, within H281DRAFT_05149 at 103.579 kb on + strand, within H281DRAFT_05149 at 103.580 kb on - strand, within H281DRAFT_05149 at 103.580 kb on - strand, within H281DRAFT_05149 at 103.580 kb on - strand, within H281DRAFT_05149 at 103.951 kb on + strand, within H281DRAFT_05149 at 104.000 kb on - strand, within H281DRAFT_05149 at 104.075 kb on + strand, within H281DRAFT_05149 at 104.092 kb on + strand, within H281DRAFT_05149 at 104.105 kb on - strand, within H281DRAFT_05149 at 104.105 kb on - strand, within H281DRAFT_05149 at 104.168 kb on + strand, within H281DRAFT_05149 at 104.168 kb on + strand, within H281DRAFT_05149 at 104.169 kb on - strand, within H281DRAFT_05149 at 104.169 kb on - strand, within H281DRAFT_05149 at 104.261 kb on - strand at 104.281 kb on - strand at 104.281 kb on - strand at 104.518 kb on + strand at 104.519 kb on - strand at 104.990 kb on + strand, within H281DRAFT_05150 at 104.992 kb on + strand, within H281DRAFT_05150 at 104.992 kb on + strand, within H281DRAFT_05150 at 105.085 kb on - strand, within H281DRAFT_05150 at 105.093 kb on + strand, within H281DRAFT_05150 at 105.112 kb on + strand at 105.113 kb on - strand at 105.113 kb on - strand at 105.173 kb on + strand at 105.262 kb on - strand at 105.271 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 102,422 - H281DRAFT_05148 0.55 -0.2 102,424 + H281DRAFT_05148 0.55 +0.6 102,501 - H281DRAFT_05148 0.60 -0.1 102,504 + H281DRAFT_05148 0.61 +0.8 102,504 + H281DRAFT_05148 0.61 +0.7 102,504 + H281DRAFT_05148 0.61 +1.5 102,504 + H281DRAFT_05148 0.61 -0.2 102,505 - H281DRAFT_05148 0.61 -0.1 102,505 - H281DRAFT_05148 0.61 +0.9 102,634 + H281DRAFT_05148 0.69 +3.1 102,635 - H281DRAFT_05148 0.70 -1.4 102,716 + H281DRAFT_05148 0.75 -0.1 103,098 + +0.4 103,098 + -0.5 103,098 + +0.9 103,243 + H281DRAFT_05149 0.12 -1.2 103,244 - H281DRAFT_05149 0.13 -0.3 103,244 - H281DRAFT_05149 0.13 +0.5 103,478 - H281DRAFT_05149 0.32 +0.5 103,579 + H281DRAFT_05149 0.40 +0.8 103,580 - H281DRAFT_05149 0.40 +0.6 103,580 - H281DRAFT_05149 0.40 +1.1 103,580 - H281DRAFT_05149 0.40 -0.6 103,951 + H281DRAFT_05149 0.71 -2.7 104,000 - H281DRAFT_05149 0.75 +0.5 104,075 + H281DRAFT_05149 0.81 -1.0 104,092 + H281DRAFT_05149 0.82 +0.3 104,105 - H281DRAFT_05149 0.83 +1.2 104,105 - H281DRAFT_05149 0.83 +1.7 104,168 + H281DRAFT_05149 0.89 +0.9 104,168 + H281DRAFT_05149 0.89 +0.5 104,169 - H281DRAFT_05149 0.89 +1.0 104,169 - H281DRAFT_05149 0.89 +0.2 104,261 - -1.4 104,281 - -0.2 104,281 - -0.7 104,518 + +0.3 104,519 - -0.5 104,990 + H281DRAFT_05150 0.73 +0.3 104,992 + H281DRAFT_05150 0.73 +0.1 104,992 + H281DRAFT_05150 0.73 +0.0 105,085 - H281DRAFT_05150 0.88 +0.7 105,093 + H281DRAFT_05150 0.90 -0.9 105,112 + -0.9 105,113 - -0.4 105,113 - -1.9 105,173 + -0.3 105,262 - -0.3 105,271 + +0.1
Or see this region's nucleotide sequence