Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05143 and H281DRAFT_05144 are separated by 6 nucleotides H281DRAFT_05144 and H281DRAFT_05145 are separated by 234 nucleotides H281DRAFT_05145 and H281DRAFT_05146 are separated by 218 nucleotides
H281DRAFT_05143: H281DRAFT_05143 - Predicted membrane protein, at 96,614 to 97,456
_05143
H281DRAFT_05144: H281DRAFT_05144 - amino acid ABC transporter substrate-binding protein, PAAT family, at 97,463 to 98,197
_05144
H281DRAFT_05145: H281DRAFT_05145 - Low affinity Fe/Cu permease, at 98,432 to 98,929
_05145
H281DRAFT_05146: H281DRAFT_05146 - methyltransferase, TIGR00027 family, at 99,148 to 100,008
_05146
Position (kb) 98
99 Strain fitness (log2 ratio) -2
-1
0
1
2 at 97.446 kb on + strand at 97.446 kb on + strand at 97.447 kb on - strand at 97.884 kb on + strand, within H281DRAFT_05144 at 97.905 kb on + strand, within H281DRAFT_05144 at 97.906 kb on - strand, within H281DRAFT_05144 at 98.317 kb on + strand at 98.433 kb on + strand at 98.433 kb on + strand at 98.896 kb on - strand at 98.896 kb on - strand at 98.958 kb on - strand at 99.273 kb on - strand, within H281DRAFT_05146 at 99.409 kb on + strand, within H281DRAFT_05146 at 99.673 kb on + strand, within H281DRAFT_05146
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 97,446 + -0.5 97,446 + -0.7 97,447 - +2.0 97,884 + H281DRAFT_05144 0.57 +1.0 97,905 + H281DRAFT_05144 0.60 -0.5 97,906 - H281DRAFT_05144 0.60 +0.4 98,317 + -2.6 98,433 + +0.9 98,433 + -2.2 98,896 - +2.2 98,896 - +1.0 98,958 - +0.5 99,273 - H281DRAFT_05146 0.15 -0.3 99,409 + H281DRAFT_05146 0.30 -1.3 99,673 + H281DRAFT_05146 0.61 +1.0
Or see this region's nucleotide sequence