Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04894 and H281DRAFT_04895 are separated by 71 nucleotides H281DRAFT_04895 and H281DRAFT_04896 are separated by 102 nucleotides H281DRAFT_04896 and H281DRAFT_04897 are separated by 711 nucleotides
H281DRAFT_04894: H281DRAFT_04894 - inner membrane transporter RhtA, at 44,476 to 45,366
_04894
H281DRAFT_04895: H281DRAFT_04895 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 45,438 to 45,989
_04895
H281DRAFT_04896: H281DRAFT_04896 - transcriptional regulator, AraC family with amidase-like domain, at 46,092 to 47,087
_04896
H281DRAFT_04897: H281DRAFT_04897 - Predicted Zn-dependent protease or its inactivated homolog, at 47,799 to 49,160
_04897
Position (kb) 46
47
48 Strain fitness (log2 ratio) -1
0
1
2 at 45.170 kb on + strand, within H281DRAFT_04894 at 45.297 kb on + strand at 45.461 kb on - strand at 45.463 kb on - strand at 46.808 kb on - strand, within H281DRAFT_04896 at 46.820 kb on + strand, within H281DRAFT_04896 at 46.895 kb on - strand, within H281DRAFT_04896 at 47.107 kb on - strand at 47.249 kb on + strand at 47.301 kb on - strand at 47.454 kb on - strand at 47.454 kb on - strand at 47.674 kb on + strand at 48.061 kb on + strand, within H281DRAFT_04897 at 48.062 kb on - strand, within H281DRAFT_04897 at 48.062 kb on - strand, within H281DRAFT_04897
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 45,170 + H281DRAFT_04894 0.78 -0.6 45,297 + -0.8 45,461 - -0.5 45,463 - +0.5 46,808 - H281DRAFT_04896 0.72 +2.1 46,820 + H281DRAFT_04896 0.73 -0.2 46,895 - H281DRAFT_04896 0.81 +0.6 47,107 - -0.4 47,249 + +0.6 47,301 - +1.1 47,454 - -0.0 47,454 - -0.6 47,674 + +0.8 48,061 + H281DRAFT_04897 0.19 +1.0 48,062 - H281DRAFT_04897 0.19 +0.5 48,062 - H281DRAFT_04897 0.19 +0.4
Or see this region's nucleotide sequence