Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04297 and H281DRAFT_04298 are separated by 188 nucleotides H281DRAFT_04298 and H281DRAFT_04299 are separated by 1 nucleotides H281DRAFT_04299 and H281DRAFT_04300 overlap by 4 nucleotides
H281DRAFT_04297: H281DRAFT_04297 - adenosylcobinamide-phosphate synthase, at 11,908 to 12,846
_04297
H281DRAFT_04298: H281DRAFT_04298 - Putative signal transducing protein, at 13,035 to 13,355
_04298
H281DRAFT_04299: H281DRAFT_04299 - ribosome biogenesis GTPase, at 13,357 to 14,349
_04299
H281DRAFT_04300: H281DRAFT_04300 - STE24 endopeptidase, at 14,346 to 15,605
_04300
Position (kb) 13
14 Strain fitness (log2 ratio) -2
-1
0
1
2 at 12.103 kb on + strand, within H281DRAFT_04297 at 12.104 kb on - strand, within H281DRAFT_04297 at 12.104 kb on - strand, within H281DRAFT_04297 at 12.106 kb on + strand at 12.106 kb on + strand, within H281DRAFT_04297 at 12.107 kb on - strand, within H281DRAFT_04297 at 12.115 kb on + strand, within H281DRAFT_04297 at 12.115 kb on + strand, within H281DRAFT_04297 at 12.116 kb on - strand, within H281DRAFT_04297 at 12.116 kb on - strand, within H281DRAFT_04297 at 12.163 kb on + strand, within H281DRAFT_04297 at 12.163 kb on + strand, within H281DRAFT_04297 at 12.164 kb on - strand, within H281DRAFT_04297 at 12.196 kb on + strand, within H281DRAFT_04297 at 12.196 kb on + strand, within H281DRAFT_04297 at 12.196 kb on + strand, within H281DRAFT_04297 at 12.197 kb on - strand, within H281DRAFT_04297 at 12.201 kb on + strand, within H281DRAFT_04297 at 12.315 kb on + strand, within H281DRAFT_04297 at 12.316 kb on - strand, within H281DRAFT_04297 at 12.316 kb on - strand, within H281DRAFT_04297 at 12.409 kb on + strand, within H281DRAFT_04297 at 12.409 kb on + strand, within H281DRAFT_04297 at 12.529 kb on - strand, within H281DRAFT_04297 at 12.574 kb on + strand, within H281DRAFT_04297 at 12.574 kb on + strand, within H281DRAFT_04297 at 12.574 kb on + strand, within H281DRAFT_04297 at 12.574 kb on + strand, within H281DRAFT_04297 at 12.575 kb on - strand, within H281DRAFT_04297 at 12.575 kb on - strand, within H281DRAFT_04297 at 12.575 kb on - strand, within H281DRAFT_04297 at 12.575 kb on - strand, within H281DRAFT_04297 at 12.575 kb on - strand, within H281DRAFT_04297 at 12.930 kb on + strand at 12.930 kb on + strand at 12.930 kb on + strand at 12.930 kb on + strand at 12.930 kb on + strand at 12.931 kb on - strand at 13.018 kb on + strand at 13.019 kb on - strand at 13.209 kb on + strand, within H281DRAFT_04298 at 13.209 kb on + strand, within H281DRAFT_04298 at 13.209 kb on + strand, within H281DRAFT_04298 at 13.210 kb on - strand, within H281DRAFT_04298 at 13.210 kb on - strand, within H281DRAFT_04298 at 13.239 kb on - strand, within H281DRAFT_04298 at 13.355 kb on + strand at 13.355 kb on + strand at 13.356 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 12,103 + H281DRAFT_04297 0.21 +0.5 12,104 - H281DRAFT_04297 0.21 +1.0 12,104 - H281DRAFT_04297 0.21 -0.4 12,106 + +1.7 12,106 + H281DRAFT_04297 0.21 -0.2 12,107 - H281DRAFT_04297 0.21 -0.2 12,115 + H281DRAFT_04297 0.22 +0.5 12,115 + H281DRAFT_04297 0.22 +2.1 12,116 - H281DRAFT_04297 0.22 +0.6 12,116 - H281DRAFT_04297 0.22 +1.6 12,163 + H281DRAFT_04297 0.27 -0.9 12,163 + H281DRAFT_04297 0.27 +0.5 12,164 - H281DRAFT_04297 0.27 +0.0 12,196 + H281DRAFT_04297 0.31 +0.0 12,196 + H281DRAFT_04297 0.31 +0.1 12,196 + H281DRAFT_04297 0.31 -0.8 12,197 - H281DRAFT_04297 0.31 -1.7 12,201 + H281DRAFT_04297 0.31 +1.3 12,315 + H281DRAFT_04297 0.43 +1.0 12,316 - H281DRAFT_04297 0.43 -0.1 12,316 - H281DRAFT_04297 0.43 -0.3 12,409 + H281DRAFT_04297 0.53 -0.4 12,409 + H281DRAFT_04297 0.53 -2.3 12,529 - H281DRAFT_04297 0.66 -0.9 12,574 + H281DRAFT_04297 0.71 -0.7 12,574 + H281DRAFT_04297 0.71 -0.9 12,574 + H281DRAFT_04297 0.71 +0.6 12,574 + H281DRAFT_04297 0.71 +0.5 12,575 - H281DRAFT_04297 0.71 +0.6 12,575 - H281DRAFT_04297 0.71 +1.4 12,575 - H281DRAFT_04297 0.71 +0.1 12,575 - H281DRAFT_04297 0.71 -0.8 12,575 - H281DRAFT_04297 0.71 -0.9 12,930 + -0.5 12,930 + +2.2 12,930 + +0.3 12,930 + +0.5 12,930 + +1.3 12,931 - -0.5 13,018 + -0.1 13,019 - -1.5 13,209 + H281DRAFT_04298 0.54 +0.1 13,209 + H281DRAFT_04298 0.54 +1.4 13,209 + H281DRAFT_04298 0.54 +0.7 13,210 - H281DRAFT_04298 0.55 -0.6 13,210 - H281DRAFT_04298 0.55 +0.5 13,239 - H281DRAFT_04298 0.64 -1.9 13,355 + +0.4 13,355 + +0.6 13,356 - -0.4
Or see this region's nucleotide sequence