Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03646 and H281DRAFT_03647 are separated by 25 nucleotides H281DRAFT_03647 and H281DRAFT_03648 are separated by 632 nucleotides
H281DRAFT_03646: H281DRAFT_03646 - 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin reductase subunit, at 154,902 to 156,167
_03646
H281DRAFT_03647: H281DRAFT_03647 - Sugar phosphate permease, at 156,193 to 157,596
_03647
H281DRAFT_03648: H281DRAFT_03648 - RHS repeat-associated core domain-containing protein, at 158,229 to 161,795
_03648
Position (kb) 156
157
158 Strain fitness (log2 ratio) -2
-1
0
1 at 155.315 kb on + strand, within H281DRAFT_03646 at 156.544 kb on - strand, within H281DRAFT_03647 at 156.697 kb on + strand, within H281DRAFT_03647 at 156.697 kb on + strand, within H281DRAFT_03647 at 156.782 kb on - strand, within H281DRAFT_03647 at 156.782 kb on - strand, within H281DRAFT_03647 at 157.023 kb on + strand, within H281DRAFT_03647 at 157.024 kb on - strand, within H281DRAFT_03647 at 157.111 kb on + strand, within H281DRAFT_03647 at 157.294 kb on + strand, within H281DRAFT_03647 at 157.295 kb on - strand, within H281DRAFT_03647 at 157.295 kb on - strand, within H281DRAFT_03647 at 157.357 kb on + strand, within H281DRAFT_03647 at 157.363 kb on + strand, within H281DRAFT_03647 at 157.364 kb on - strand, within H281DRAFT_03647 at 157.378 kb on + strand, within H281DRAFT_03647 at 157.502 kb on - strand at 157.622 kb on + strand at 157.747 kb on + strand at 157.923 kb on - strand at 157.923 kb on - strand at 157.994 kb on - strand at 158.161 kb on - strand at 158.181 kb on + strand at 158.355 kb on + strand at 158.357 kb on + strand at 158.357 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 155,315 + H281DRAFT_03646 0.33 +0.6 156,544 - H281DRAFT_03647 0.25 -0.3 156,697 + H281DRAFT_03647 0.36 +0.9 156,697 + H281DRAFT_03647 0.36 +0.3 156,782 - H281DRAFT_03647 0.42 -1.2 156,782 - H281DRAFT_03647 0.42 -0.8 157,023 + H281DRAFT_03647 0.59 +0.2 157,024 - H281DRAFT_03647 0.59 -0.8 157,111 + H281DRAFT_03647 0.65 +1.3 157,294 + H281DRAFT_03647 0.78 -0.5 157,295 - H281DRAFT_03647 0.78 -0.7 157,295 - H281DRAFT_03647 0.78 -1.3 157,357 + H281DRAFT_03647 0.83 +0.3 157,363 + H281DRAFT_03647 0.83 -0.2 157,364 - H281DRAFT_03647 0.83 -0.1 157,378 + H281DRAFT_03647 0.84 -1.8 157,502 - +0.8 157,622 + -0.7 157,747 + +0.9 157,923 - +0.9 157,923 - -0.1 157,994 - +0.8 158,161 - -2.4 158,181 + +0.1 158,355 + +0.6 158,357 + -0.3 158,357 + -1.7
Or see this region's nucleotide sequence