Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03143 and H281DRAFT_03144 are separated by 335 nucleotides H281DRAFT_03144 and H281DRAFT_03145 overlap by 4 nucleotides
H281DRAFT_03143: H281DRAFT_03143 - FAD/FMN-containing dehydrogenase, at 181,018 to 182,406
_03143
H281DRAFT_03144: H281DRAFT_03144 - putative phosphoesterase, at 182,742 to 183,404
_03144
H281DRAFT_03145: H281DRAFT_03145 - ATP-dependent helicase Lhr and Lhr-like helicase, at 183,401 to 186,058
_03145
Position (kb) 182
183
184 Strain fitness (log2 ratio) -1
0
1
2 at 181.954 kb on - strand at 182.360 kb on - strand at 182.361 kb on + strand at 182.462 kb on + strand at 182.516 kb on + strand at 182.516 kb on + strand at 182.704 kb on + strand at 182.705 kb on - strand at 182.948 kb on - strand, within H281DRAFT_03144 at 182.995 kb on - strand, within H281DRAFT_03144 at 183.016 kb on + strand, within H281DRAFT_03144 at 183.494 kb on + strand at 183.495 kb on - strand at 183.495 kb on - strand at 183.495 kb on - strand at 183.606 kb on - strand at 183.632 kb on + strand at 183.635 kb on + strand at 183.664 kb on + strand at 183.670 kb on - strand, within H281DRAFT_03145 at 183.670 kb on - strand, within H281DRAFT_03145 at 183.806 kb on + strand, within H281DRAFT_03145 at 183.806 kb on + strand, within H281DRAFT_03145 at 183.806 kb on + strand, within H281DRAFT_03145 at 184.128 kb on + strand, within H281DRAFT_03145 at 184.128 kb on + strand, within H281DRAFT_03145 at 184.129 kb on - strand, within H281DRAFT_03145 at 184.346 kb on + strand, within H281DRAFT_03145 at 184.374 kb on + strand, within H281DRAFT_03145 at 184.375 kb on - strand, within H281DRAFT_03145
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 181,954 - -1.1 182,360 - +1.0 182,361 + +0.7 182,462 + +0.5 182,516 + +0.0 182,516 + +0.2 182,704 + -1.5 182,705 - +0.0 182,948 - H281DRAFT_03144 0.31 +0.4 182,995 - H281DRAFT_03144 0.38 +0.7 183,016 + H281DRAFT_03144 0.41 +0.8 183,494 + -1.5 183,495 - -0.7 183,495 - +0.3 183,495 - +0.8 183,606 - +1.4 183,632 + -0.3 183,635 + +0.5 183,664 + +0.4 183,670 - H281DRAFT_03145 0.10 +0.4 183,670 - H281DRAFT_03145 0.10 -0.8 183,806 + H281DRAFT_03145 0.15 -1.0 183,806 + H281DRAFT_03145 0.15 +1.2 183,806 + H281DRAFT_03145 0.15 +2.7 184,128 + H281DRAFT_03145 0.27 -0.5 184,128 + H281DRAFT_03145 0.27 +1.6 184,129 - H281DRAFT_03145 0.27 -1.3 184,346 + H281DRAFT_03145 0.36 -0.6 184,374 + H281DRAFT_03145 0.37 -0.4 184,375 - H281DRAFT_03145 0.37 -0.7
Or see this region's nucleotide sequence