Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02778

Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_02777 and H281DRAFT_02778 are separated by 249 nucleotidesH281DRAFT_02778 and H281DRAFT_02779 are separated by 9 nucleotidesH281DRAFT_02779 and H281DRAFT_02780 overlap by 8 nucleotides H281DRAFT_02777: H281DRAFT_02777 - alpha-glucosidase, at 367,430 to 369,004 _02777 H281DRAFT_02778: H281DRAFT_02778 - two-component system, NtrC family, sensor kinase, at 369,254 to 370,672 _02778 H281DRAFT_02779: H281DRAFT_02779 - Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain, at 370,682 to 371,050 _02779 H281DRAFT_02780: H281DRAFT_02780 - chemotaxis protein CheC, at 371,043 to 371,645 _02780 Position (kb) 369 370 371Strain fitness (log2 ratio) -1 0 1 2at 368.496 kb on - strand, within H281DRAFT_02777at 368.683 kb on + strand, within H281DRAFT_02777at 369.480 kb on - strand, within H281DRAFT_02778at 370.170 kb on - strand, within H281DRAFT_02778at 370.485 kb on - strand, within H281DRAFT_02778

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
remove
368,496 - H281DRAFT_02777 0.68 +2.5
368,683 + H281DRAFT_02777 0.80 -0.3
369,480 - H281DRAFT_02778 0.16 +0.2
370,170 - H281DRAFT_02778 0.65 +0.0
370,485 - H281DRAFT_02778 0.87 -0.2

Or see this region's nucleotide sequence