Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02273 and H281DRAFT_02274 are separated by 173 nucleotides H281DRAFT_02274 and H281DRAFT_02275 overlap by 23 nucleotides H281DRAFT_02275 and H281DRAFT_02276 overlap by 4 nucleotides
H281DRAFT_02273: H281DRAFT_02273 - hypothetical protein, at 418,820 to 419,194
_02273
H281DRAFT_02274: H281DRAFT_02274 - Site-specific DNA recombinase, at 419,368 to 420,882
_02274
H281DRAFT_02275: H281DRAFT_02275 - chromosome partitioning protein, ParB family, at 420,860 to 421,774
_02275
H281DRAFT_02276: H281DRAFT_02276 - ParB-like nuclease domain-containing protein, at 421,771 to 422,670
_02276
Position (kb) 419
420
421 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 418.475 kb on + strand at 418.572 kb on + strand at 418.572 kb on + strand at 418.572 kb on + strand at 418.572 kb on + strand at 418.572 kb on + strand at 418.572 kb on + strand at 418.572 kb on + strand at 418.572 kb on + strand at 418.572 kb on + strand at 418.572 kb on + strand at 418.572 kb on + strand at 418.572 kb on + strand at 418.572 kb on + strand at 418.572 kb on + strand at 418.572 kb on + strand at 418.572 kb on + strand at 418.572 kb on + strand at 418.573 kb on - strand at 418.573 kb on - strand at 418.573 kb on - strand at 418.573 kb on - strand at 418.573 kb on - strand at 418.573 kb on - strand at 418.573 kb on - strand at 418.645 kb on + strand at 418.646 kb on - strand at 418.646 kb on - strand at 418.648 kb on + strand at 418.807 kb on - strand at 418.859 kb on - strand, within H281DRAFT_02273 at 418.859 kb on - strand, within H281DRAFT_02273 at 418.985 kb on - strand, within H281DRAFT_02273 at 418.992 kb on - strand, within H281DRAFT_02273 at 418.992 kb on - strand, within H281DRAFT_02273 at 419.036 kb on - strand, within H281DRAFT_02273 at 419.213 kb on + strand at 419.214 kb on - strand at 419.214 kb on - strand at 419.215 kb on + strand at 419.215 kb on + strand at 419.216 kb on - strand at 419.230 kb on + strand at 419.230 kb on + strand at 419.231 kb on - strand at 419.360 kb on - strand at 419.367 kb on + strand at 419.367 kb on + strand at 419.367 kb on + strand at 419.367 kb on + strand at 419.367 kb on + strand at 419.368 kb on - strand at 419.389 kb on + strand at 419.459 kb on + strand at 419.461 kb on + strand at 419.461 kb on + strand at 419.461 kb on + strand at 419.462 kb on - strand at 419.551 kb on + strand, within H281DRAFT_02274 at 419.551 kb on + strand, within H281DRAFT_02274 at 419.552 kb on - strand, within H281DRAFT_02274 at 419.577 kb on - strand, within H281DRAFT_02274 at 419.660 kb on - strand, within H281DRAFT_02274 at 419.660 kb on - strand, within H281DRAFT_02274 at 419.709 kb on - strand, within H281DRAFT_02274 at 419.725 kb on - strand, within H281DRAFT_02274 at 419.789 kb on + strand, within H281DRAFT_02274 at 419.789 kb on + strand, within H281DRAFT_02274 at 419.790 kb on - strand, within H281DRAFT_02274 at 419.790 kb on - strand, within H281DRAFT_02274 at 419.790 kb on - strand at 419.790 kb on - strand, within H281DRAFT_02274 at 419.866 kb on - strand, within H281DRAFT_02274 at 419.954 kb on + strand, within H281DRAFT_02274 at 419.964 kb on - strand, within H281DRAFT_02274 at 419.965 kb on + strand, within H281DRAFT_02274 at 419.965 kb on + strand, within H281DRAFT_02274 at 419.966 kb on - strand, within H281DRAFT_02274 at 419.966 kb on - strand, within H281DRAFT_02274 at 419.966 kb on - strand, within H281DRAFT_02274 at 419.966 kb on - strand, within H281DRAFT_02274 at 420.083 kb on + strand, within H281DRAFT_02274 at 420.084 kb on - strand, within H281DRAFT_02274 at 420.084 kb on - strand, within H281DRAFT_02274 at 420.097 kb on + strand, within H281DRAFT_02274 at 420.097 kb on + strand at 420.097 kb on + strand, within H281DRAFT_02274 at 420.097 kb on + strand, within H281DRAFT_02274 at 420.097 kb on + strand, within H281DRAFT_02274 at 420.097 kb on + strand, within H281DRAFT_02274 at 420.098 kb on - strand, within H281DRAFT_02274 at 420.098 kb on - strand, within H281DRAFT_02274 at 420.264 kb on + strand, within H281DRAFT_02274 at 420.265 kb on - strand, within H281DRAFT_02274 at 420.265 kb on - strand, within H281DRAFT_02274 at 420.299 kb on + strand, within H281DRAFT_02274 at 420.299 kb on + strand, within H281DRAFT_02274 at 420.403 kb on + strand, within H281DRAFT_02274 at 420.403 kb on + strand, within H281DRAFT_02274 at 420.403 kb on + strand, within H281DRAFT_02274 at 420.403 kb on + strand, within H281DRAFT_02274 at 420.404 kb on - strand, within H281DRAFT_02274 at 420.418 kb on + strand, within H281DRAFT_02274 at 420.418 kb on + strand, within H281DRAFT_02274 at 420.443 kb on - strand, within H281DRAFT_02274 at 420.443 kb on - strand, within H281DRAFT_02274 at 420.443 kb on - strand, within H281DRAFT_02274 at 420.577 kb on - strand, within H281DRAFT_02274 at 420.648 kb on + strand at 420.715 kb on + strand, within H281DRAFT_02274 at 420.715 kb on + strand, within H281DRAFT_02274 at 420.719 kb on - strand, within H281DRAFT_02274 at 420.769 kb on + strand at 420.769 kb on + strand at 420.877 kb on - strand at 421.132 kb on + strand, within H281DRAFT_02275 at 421.133 kb on - strand, within H281DRAFT_02275 at 421.201 kb on + strand, within H281DRAFT_02275 at 421.250 kb on + strand, within H281DRAFT_02275 at 421.252 kb on + strand, within H281DRAFT_02275 at 421.253 kb on - strand, within H281DRAFT_02275 at 421.253 kb on - strand, within H281DRAFT_02275 at 421.253 kb on - strand, within H281DRAFT_02275 at 421.295 kb on + strand, within H281DRAFT_02275 at 421.296 kb on - strand, within H281DRAFT_02275 at 421.296 kb on - strand, within H281DRAFT_02275 at 421.296 kb on - strand, within H281DRAFT_02275 at 421.297 kb on + strand, within H281DRAFT_02275 at 421.364 kb on - strand, within H281DRAFT_02275 at 421.368 kb on + strand, within H281DRAFT_02275 at 421.440 kb on - strand, within H281DRAFT_02275 at 421.496 kb on - strand, within H281DRAFT_02275 at 421.520 kb on + strand, within H281DRAFT_02275 at 421.521 kb on - strand, within H281DRAFT_02275 at 421.521 kb on - strand, within H281DRAFT_02275 at 421.740 kb on + strand at 421.750 kb on + strand at 421.751 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 418,475 + +0.5 418,572 + +0.2 418,572 + -0.8 418,572 + +0.8 418,572 + +0.3 418,572 + +1.3 418,572 + +0.0 418,572 + -1.3 418,572 + +0.6 418,572 + -0.5 418,572 + -0.2 418,572 + +0.2 418,572 + +0.5 418,572 + +0.6 418,572 + +0.8 418,572 + -0.1 418,572 + -0.5 418,572 + +0.7 418,573 - +0.1 418,573 - -0.3 418,573 - -1.6 418,573 - -0.0 418,573 - -0.5 418,573 - -0.2 418,573 - -0.1 418,645 + +1.1 418,646 - +1.1 418,646 - -0.4 418,648 + +0.6 418,807 - +0.4 418,859 - H281DRAFT_02273 0.10 +0.5 418,859 - H281DRAFT_02273 0.10 +0.2 418,985 - H281DRAFT_02273 0.44 +0.6 418,992 - H281DRAFT_02273 0.46 +0.1 418,992 - H281DRAFT_02273 0.46 +1.0 419,036 - H281DRAFT_02273 0.58 +2.0 419,213 + -0.5 419,214 - +0.7 419,214 - +2.7 419,215 + -0.7 419,215 + -0.0 419,216 - +0.0 419,230 + -0.8 419,230 + -0.2 419,231 - +0.7 419,360 - +0.1 419,367 + +1.3 419,367 + -0.2 419,367 + -0.4 419,367 + +0.6 419,367 + +1.2 419,368 - -0.8 419,389 + -0.0 419,459 + -0.4 419,461 + +0.5 419,461 + +1.0 419,461 + -0.9 419,462 - +1.1 419,551 + H281DRAFT_02274 0.12 -1.2 419,551 + H281DRAFT_02274 0.12 +1.4 419,552 - H281DRAFT_02274 0.12 -0.3 419,577 - H281DRAFT_02274 0.14 -2.6 419,660 - H281DRAFT_02274 0.19 +0.6 419,660 - H281DRAFT_02274 0.19 +0.8 419,709 - H281DRAFT_02274 0.23 -0.1 419,725 - H281DRAFT_02274 0.24 -1.5 419,789 + H281DRAFT_02274 0.28 +0.6 419,789 + H281DRAFT_02274 0.28 +0.7 419,790 - H281DRAFT_02274 0.28 +1.0 419,790 - H281DRAFT_02274 0.28 +0.0 419,790 - -0.9 419,790 - H281DRAFT_02274 0.28 -0.1 419,866 - H281DRAFT_02274 0.33 +0.1 419,954 + H281DRAFT_02274 0.39 +0.6 419,964 - H281DRAFT_02274 0.39 +0.0 419,965 + H281DRAFT_02274 0.39 -0.9 419,965 + H281DRAFT_02274 0.39 +1.5 419,966 - H281DRAFT_02274 0.39 +1.1 419,966 - H281DRAFT_02274 0.39 -0.7 419,966 - H281DRAFT_02274 0.39 -0.8 419,966 - H281DRAFT_02274 0.39 +1.7 420,083 + H281DRAFT_02274 0.47 +0.5 420,084 - H281DRAFT_02274 0.47 -1.1 420,084 - H281DRAFT_02274 0.47 +0.7 420,097 + H281DRAFT_02274 0.48 -0.7 420,097 + -1.5 420,097 + H281DRAFT_02274 0.48 +0.4 420,097 + H281DRAFT_02274 0.48 +0.8 420,097 + H281DRAFT_02274 0.48 -0.7 420,097 + H281DRAFT_02274 0.48 -0.3 420,098 - H281DRAFT_02274 0.48 +0.9 420,098 - H281DRAFT_02274 0.48 -0.9 420,264 + H281DRAFT_02274 0.59 +1.2 420,265 - H281DRAFT_02274 0.59 -0.2 420,265 - H281DRAFT_02274 0.59 -1.3 420,299 + H281DRAFT_02274 0.61 -0.2 420,299 + H281DRAFT_02274 0.61 +0.1 420,403 + H281DRAFT_02274 0.68 -0.4 420,403 + H281DRAFT_02274 0.68 +0.2 420,403 + H281DRAFT_02274 0.68 +1.1 420,403 + H281DRAFT_02274 0.68 -1.3 420,404 - H281DRAFT_02274 0.68 +0.5 420,418 + H281DRAFT_02274 0.69 +1.5 420,418 + H281DRAFT_02274 0.69 +0.3 420,443 - H281DRAFT_02274 0.71 -0.2 420,443 - H281DRAFT_02274 0.71 -0.3 420,443 - H281DRAFT_02274 0.71 +2.5 420,577 - H281DRAFT_02274 0.80 -0.2 420,648 + -0.9 420,715 + H281DRAFT_02274 0.89 -0.9 420,715 + H281DRAFT_02274 0.89 -0.2 420,719 - H281DRAFT_02274 0.89 -3.3 420,769 + -0.9 420,769 + +0.0 420,877 - +0.4 421,132 + H281DRAFT_02275 0.30 +0.2 421,133 - H281DRAFT_02275 0.30 +0.2 421,201 + H281DRAFT_02275 0.37 +0.1 421,250 + H281DRAFT_02275 0.43 +0.5 421,252 + H281DRAFT_02275 0.43 +1.1 421,253 - H281DRAFT_02275 0.43 -1.2 421,253 - H281DRAFT_02275 0.43 -0.0 421,253 - H281DRAFT_02275 0.43 +0.7 421,295 + H281DRAFT_02275 0.48 -0.1 421,296 - H281DRAFT_02275 0.48 +0.3 421,296 - H281DRAFT_02275 0.48 -1.3 421,296 - H281DRAFT_02275 0.48 -1.2 421,297 + H281DRAFT_02275 0.48 -1.0 421,364 - H281DRAFT_02275 0.55 +3.5 421,368 + H281DRAFT_02275 0.56 +1.1 421,440 - H281DRAFT_02275 0.63 +0.2 421,496 - H281DRAFT_02275 0.70 +0.7 421,520 + H281DRAFT_02275 0.72 +0.1 421,521 - H281DRAFT_02275 0.72 -0.8 421,521 - H281DRAFT_02275 0.72 +0.5 421,740 + +1.3 421,750 + +1.4 421,751 - +1.9
Or see this region's nucleotide sequence