Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02211 and H281DRAFT_02212 are separated by 127 nucleotides H281DRAFT_02212 and H281DRAFT_02213 overlap by 34 nucleotides H281DRAFT_02213 and H281DRAFT_02214 are separated by 336 nucleotides
H281DRAFT_02211: H281DRAFT_02211 - N-acetylglutamate kinase, at 354,097 to 354,996
_02211
H281DRAFT_02212: H281DRAFT_02212 - pyrimidine 5'-nucleotidase, at 355,124 to 355,927
_02212
H281DRAFT_02213: H281DRAFT_02213 - transcriptional regulator, TetR family, at 355,894 to 356,574
_02213
H281DRAFT_02214: H281DRAFT_02214 - homoserine O-acetyltransferase, at 356,911 to 358,056
_02214
Position (kb) 355
356
357 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 355.019 kb on + strand at 355.019 kb on + strand at 355.019 kb on + strand at 355.019 kb on + strand at 355.019 kb on + strand at 355.019 kb on + strand at 355.019 kb on + strand at 355.020 kb on - strand at 355.020 kb on - strand at 355.020 kb on - strand at 355.045 kb on - strand at 355.074 kb on + strand at 355.074 kb on + strand at 355.074 kb on + strand at 355.074 kb on + strand at 355.074 kb on + strand at 355.075 kb on - strand at 355.075 kb on - strand at 355.075 kb on - strand at 355.116 kb on + strand at 355.116 kb on + strand at 355.259 kb on + strand, within H281DRAFT_02212 at 355.260 kb on - strand, within H281DRAFT_02212 at 355.260 kb on - strand, within H281DRAFT_02212 at 355.420 kb on + strand, within H281DRAFT_02212 at 355.420 kb on + strand, within H281DRAFT_02212 at 355.421 kb on - strand, within H281DRAFT_02212 at 355.421 kb on - strand, within H281DRAFT_02212 at 355.421 kb on - strand at 355.700 kb on + strand, within H281DRAFT_02212 at 355.700 kb on + strand, within H281DRAFT_02212 at 355.725 kb on + strand, within H281DRAFT_02212 at 355.726 kb on - strand, within H281DRAFT_02212 at 355.805 kb on + strand, within H281DRAFT_02212 at 355.805 kb on + strand, within H281DRAFT_02212 at 355.998 kb on + strand at 355.998 kb on + strand, within H281DRAFT_02213 at 355.999 kb on - strand, within H281DRAFT_02213 at 356.098 kb on + strand, within H281DRAFT_02213 at 356.099 kb on - strand, within H281DRAFT_02213 at 356.138 kb on + strand, within H281DRAFT_02213 at 356.138 kb on + strand, within H281DRAFT_02213 at 356.139 kb on - strand, within H281DRAFT_02213 at 356.444 kb on - strand, within H281DRAFT_02213 at 356.444 kb on - strand, within H281DRAFT_02213 at 356.479 kb on + strand, within H281DRAFT_02213 at 356.479 kb on + strand, within H281DRAFT_02213 at 356.479 kb on + strand, within H281DRAFT_02213 at 356.480 kb on - strand, within H281DRAFT_02213 at 356.480 kb on - strand, within H281DRAFT_02213 at 356.482 kb on - strand, within H281DRAFT_02213 at 356.526 kb on + strand at 356.527 kb on - strand at 356.527 kb on - strand at 356.633 kb on + strand at 356.634 kb on - strand at 356.634 kb on - strand at 356.715 kb on + strand at 356.715 kb on + strand at 356.715 kb on + strand at 356.715 kb on + strand at 356.715 kb on + strand at 356.715 kb on + strand at 356.716 kb on - strand at 356.716 kb on - strand at 356.716 kb on - strand at 356.744 kb on + strand at 356.745 kb on - strand at 356.745 kb on - strand at 356.747 kb on + strand at 356.748 kb on - strand at 356.748 kb on - strand at 356.811 kb on - strand at 356.812 kb on + strand at 356.812 kb on + strand at 356.995 kb on + strand at 357.017 kb on - strand at 357.017 kb on - strand at 357.017 kb on - strand at 357.017 kb on - strand at 357.097 kb on + strand, within H281DRAFT_02214 at 357.168 kb on + strand, within H281DRAFT_02214 at 357.334 kb on - strand, within H281DRAFT_02214 at 357.400 kb on + strand, within H281DRAFT_02214 at 357.400 kb on + strand, within H281DRAFT_02214 at 357.526 kb on + strand, within H281DRAFT_02214 at 357.526 kb on + strand, within H281DRAFT_02214 at 357.526 kb on + strand, within H281DRAFT_02214 at 357.526 kb on + strand, within H281DRAFT_02214 at 357.527 kb on - strand, within H281DRAFT_02214 at 357.527 kb on - strand, within H281DRAFT_02214 at 357.538 kb on - strand, within H281DRAFT_02214
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 355,019 + -0.8 355,019 + +0.6 355,019 + +0.2 355,019 + +0.9 355,019 + -0.8 355,019 + -1.6 355,019 + +0.1 355,020 - +0.3 355,020 - +1.6 355,020 - -0.5 355,045 - -0.2 355,074 + +0.4 355,074 + +0.2 355,074 + -1.0 355,074 + +0.9 355,074 + -0.1 355,075 - +0.7 355,075 - -2.4 355,075 - -1.7 355,116 + +0.3 355,116 + -1.1 355,259 + H281DRAFT_02212 0.17 +0.8 355,260 - H281DRAFT_02212 0.17 +0.7 355,260 - H281DRAFT_02212 0.17 -1.4 355,420 + H281DRAFT_02212 0.37 +0.2 355,420 + H281DRAFT_02212 0.37 +0.7 355,421 - H281DRAFT_02212 0.37 -0.6 355,421 - H281DRAFT_02212 0.37 +0.8 355,421 - -1.2 355,700 + H281DRAFT_02212 0.72 +0.6 355,700 + H281DRAFT_02212 0.72 -0.5 355,725 + H281DRAFT_02212 0.75 -0.7 355,726 - H281DRAFT_02212 0.75 +0.1 355,805 + H281DRAFT_02212 0.85 +0.4 355,805 + H281DRAFT_02212 0.85 +0.3 355,998 + +1.1 355,998 + H281DRAFT_02213 0.15 -2.2 355,999 - H281DRAFT_02213 0.15 -0.1 356,098 + H281DRAFT_02213 0.30 +0.1 356,099 - H281DRAFT_02213 0.30 +1.4 356,138 + H281DRAFT_02213 0.36 +0.0 356,138 + H281DRAFT_02213 0.36 -1.4 356,139 - H281DRAFT_02213 0.36 -0.2 356,444 - H281DRAFT_02213 0.81 -0.5 356,444 - H281DRAFT_02213 0.81 -2.0 356,479 + H281DRAFT_02213 0.86 +0.7 356,479 + H281DRAFT_02213 0.86 -0.4 356,479 + H281DRAFT_02213 0.86 -1.2 356,480 - H281DRAFT_02213 0.86 +0.4 356,480 - H281DRAFT_02213 0.86 -0.6 356,482 - H281DRAFT_02213 0.86 +0.7 356,526 + +0.2 356,527 - +1.4 356,527 - +0.7 356,633 + -0.1 356,634 - -4.2 356,634 - -3.2 356,715 + -0.6 356,715 + +0.2 356,715 + +0.1 356,715 + -1.3 356,715 + +0.3 356,715 + -0.1 356,716 - -3.8 356,716 - -3.5 356,716 - -3.0 356,744 + -0.9 356,745 - -4.8 356,745 - -4.2 356,747 + -0.4 356,748 - -2.5 356,748 - -3.6 356,811 - -4.5 356,812 + +0.1 356,812 + +0.5 356,995 + -1.2 357,017 - -4.7 357,017 - -0.5 357,017 - -3.5 357,017 - -1.3 357,097 + H281DRAFT_02214 0.16 -1.2 357,168 + H281DRAFT_02214 0.22 -4.6 357,334 - H281DRAFT_02214 0.37 -5.7 357,400 + H281DRAFT_02214 0.43 -3.7 357,400 + H281DRAFT_02214 0.43 -4.4 357,526 + H281DRAFT_02214 0.54 -0.5 357,526 + H281DRAFT_02214 0.54 +1.1 357,526 + H281DRAFT_02214 0.54 -4.6 357,526 + H281DRAFT_02214 0.54 -4.4 357,527 - H281DRAFT_02214 0.54 -4.9 357,527 - H281DRAFT_02214 0.54 -4.8 357,538 - H281DRAFT_02214 0.55 -3.7
Or see this region's nucleotide sequence