Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00240 and H281DRAFT_00241 are separated by 91 nucleotides H281DRAFT_00241 and H281DRAFT_00242 are separated by 153 nucleotides H281DRAFT_00242 and H281DRAFT_00243 are separated by 21 nucleotides H281DRAFT_00243 and H281DRAFT_00244 are separated by 99 nucleotides H281DRAFT_00244 and H281DRAFT_00245 are separated by 142 nucleotides
H281DRAFT_00240: H281DRAFT_00240 - two component, sigma54 specific, transcriptional regulator, NtrC subfamily, Fis family, at 258,659 to 260,059
_00240
H281DRAFT_00241: H281DRAFT_00241 - hypothetical protein, at 260,151 to 260,366
_00241
H281DRAFT_00242: H281DRAFT_00242 - hypothetical protein, at 260,520 to 260,795
_00242
H281DRAFT_00243: H281DRAFT_00243 - hypothetical protein, at 260,817 to 260,921
_00243
H281DRAFT_00244: H281DRAFT_00244 - trehalose 6-phosphate synthase, at 261,021 to 262,448
_00244
H281DRAFT_00245: H281DRAFT_00245 - MFS transporter, DHA2 family, multidrug resistance protein, at 262,591 to 264,039
_00245
Position (kb) 261
262
263 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 260.058 kb on - strand at 260.412 kb on - strand at 260.448 kb on + strand at 260.470 kb on + strand at 260.470 kb on + strand at 260.471 kb on - strand at 260.724 kb on + strand, within H281DRAFT_00242 at 260.724 kb on + strand, within H281DRAFT_00242 at 260.725 kb on - strand, within H281DRAFT_00242 at 260.761 kb on - strand, within H281DRAFT_00242 at 260.815 kb on - strand at 260.917 kb on + strand at 260.918 kb on - strand at 261.007 kb on + strand at 261.007 kb on + strand at 261.007 kb on + strand at 261.007 kb on + strand at 261.207 kb on + strand, within H281DRAFT_00244 at 261.208 kb on - strand, within H281DRAFT_00244 at 261.237 kb on + strand, within H281DRAFT_00244 at 261.238 kb on - strand, within H281DRAFT_00244 at 261.313 kb on - strand, within H281DRAFT_00244 at 261.327 kb on + strand, within H281DRAFT_00244 at 261.328 kb on - strand, within H281DRAFT_00244 at 261.328 kb on - strand, within H281DRAFT_00244 at 261.328 kb on - strand, within H281DRAFT_00244 at 261.337 kb on - strand, within H281DRAFT_00244 at 261.511 kb on + strand, within H281DRAFT_00244 at 261.559 kb on - strand, within H281DRAFT_00244 at 261.663 kb on + strand, within H281DRAFT_00244 at 261.691 kb on - strand, within H281DRAFT_00244 at 261.702 kb on - strand, within H281DRAFT_00244 at 262.026 kb on + strand, within H281DRAFT_00244 at 262.041 kb on + strand, within H281DRAFT_00244 at 262.134 kb on + strand, within H281DRAFT_00244 at 262.134 kb on + strand, within H281DRAFT_00244 at 262.135 kb on - strand, within H281DRAFT_00244 at 262.358 kb on + strand at 262.358 kb on + strand at 262.622 kb on - strand at 262.673 kb on + strand at 262.673 kb on + strand at 262.674 kb on - strand at 262.831 kb on - strand, within H281DRAFT_00245 at 262.831 kb on - strand, within H281DRAFT_00245
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 260,058 - -1.5 260,412 - +0.7 260,448 + -0.4 260,470 + +1.7 260,470 + +0.1 260,471 - +0.9 260,724 + H281DRAFT_00242 0.74 -3.1 260,724 + H281DRAFT_00242 0.74 -1.0 260,725 - H281DRAFT_00242 0.74 +0.3 260,761 - H281DRAFT_00242 0.87 +0.8 260,815 - +1.0 260,917 + -2.0 260,918 - -0.3 261,007 + +0.1 261,007 + -0.4 261,007 + +0.7 261,007 + -0.3 261,207 + H281DRAFT_00244 0.13 -0.7 261,208 - H281DRAFT_00244 0.13 +0.5 261,237 + H281DRAFT_00244 0.15 -0.2 261,238 - H281DRAFT_00244 0.15 +0.6 261,313 - H281DRAFT_00244 0.20 +0.3 261,327 + H281DRAFT_00244 0.21 +0.8 261,328 - H281DRAFT_00244 0.21 +0.2 261,328 - H281DRAFT_00244 0.21 +1.3 261,328 - H281DRAFT_00244 0.21 +0.2 261,337 - H281DRAFT_00244 0.22 +0.5 261,511 + H281DRAFT_00244 0.34 -0.6 261,559 - H281DRAFT_00244 0.38 +0.5 261,663 + H281DRAFT_00244 0.45 +0.2 261,691 - H281DRAFT_00244 0.47 -1.6 261,702 - H281DRAFT_00244 0.48 -2.1 262,026 + H281DRAFT_00244 0.70 -0.9 262,041 + H281DRAFT_00244 0.71 +0.2 262,134 + H281DRAFT_00244 0.78 +0.2 262,134 + H281DRAFT_00244 0.78 -0.2 262,135 - H281DRAFT_00244 0.78 +1.6 262,358 + +1.8 262,358 + +0.3 262,622 - -0.8 262,673 + -0.4 262,673 + -0.0 262,674 - +1.9 262,831 - H281DRAFT_00245 0.17 +0.5 262,831 - H281DRAFT_00245 0.17 +0.5
Or see this region's nucleotide sequence