Experiment: DinoMM minimal media with L-Threonine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c06710 and PGA1_c06720 are separated by 322 nucleotides PGA1_c06720 and PGA1_c06730 are separated by 406 nucleotides
PGA1_c06710: PGA1_c06710 - cytochrome c oxidase subunit 1-beta, at 688,056 to 689,729
_c06710
PGA1_c06720: PGA1_c06720 - Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases, at 690,052 to 690,477
_c06720
PGA1_c06730: PGA1_c06730 - Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily), at 690,884 to 692,806
_c06730
Position (kb) 690
691 Strain fitness (log2 ratio) -2
-1
0
1
2 at 689.262 kb on - strand, within PGA1_c06710 at 689.873 kb on + strand at 689.892 kb on + strand at 689.900 kb on - strand at 690.033 kb on + strand at 690.041 kb on - strand at 690.041 kb on - strand at 690.110 kb on - strand, within PGA1_c06720 at 690.118 kb on + strand, within PGA1_c06720 at 690.118 kb on + strand, within PGA1_c06720 at 690.126 kb on - strand, within PGA1_c06720 at 690.126 kb on - strand, within PGA1_c06720 at 690.126 kb on - strand, within PGA1_c06720 at 690.126 kb on - strand, within PGA1_c06720 at 690.133 kb on - strand, within PGA1_c06720 at 690.136 kb on + strand, within PGA1_c06720 at 690.138 kb on - strand, within PGA1_c06720 at 690.144 kb on - strand, within PGA1_c06720 at 690.173 kb on + strand, within PGA1_c06720 at 690.173 kb on + strand, within PGA1_c06720 at 690.173 kb on + strand, within PGA1_c06720 at 690.226 kb on + strand, within PGA1_c06720 at 690.252 kb on - strand, within PGA1_c06720 at 690.264 kb on - strand, within PGA1_c06720 at 690.272 kb on + strand, within PGA1_c06720 at 690.300 kb on + strand, within PGA1_c06720 at 690.327 kb on + strand, within PGA1_c06720 at 690.327 kb on + strand, within PGA1_c06720 at 690.335 kb on - strand, within PGA1_c06720 at 690.335 kb on - strand, within PGA1_c06720 at 690.464 kb on - strand at 690.476 kb on + strand at 690.493 kb on + strand at 690.493 kb on + strand at 690.602 kb on - strand at 690.655 kb on + strand at 690.663 kb on - strand at 690.756 kb on + strand at 690.769 kb on - strand at 690.788 kb on + strand at 690.806 kb on - strand at 690.826 kb on - strand at 690.869 kb on - strand at 690.876 kb on + strand at 690.886 kb on + strand at 690.894 kb on - strand at 690.901 kb on + strand at 690.909 kb on - strand at 690.933 kb on + strand at 690.993 kb on - strand at 691.063 kb on - strand at 691.093 kb on + strand, within PGA1_c06730 at 691.111 kb on - strand, within PGA1_c06730 at 691.138 kb on - strand, within PGA1_c06730 at 691.164 kb on - strand, within PGA1_c06730 at 691.175 kb on + strand, within PGA1_c06730 at 691.175 kb on + strand, within PGA1_c06730 at 691.175 kb on + strand, within PGA1_c06730 at 691.175 kb on + strand, within PGA1_c06730 at 691.183 kb on - strand, within PGA1_c06730 at 691.300 kb on + strand, within PGA1_c06730 at 691.331 kb on + strand, within PGA1_c06730 at 691.390 kb on + strand, within PGA1_c06730 at 691.390 kb on + strand, within PGA1_c06730 at 691.398 kb on - strand, within PGA1_c06730 at 691.398 kb on - strand, within PGA1_c06730 at 691.455 kb on - strand, within PGA1_c06730 at 691.462 kb on + strand, within PGA1_c06730 at 691.472 kb on + strand, within PGA1_c06730 at 691.472 kb on + strand, within PGA1_c06730 at 691.472 kb on + strand, within PGA1_c06730 at 691.472 kb on + strand, within PGA1_c06730
Per-strain Table
Position Strand Gene LocusTag Fraction DinoMM minimal media with L-Threonine remove 689,262 - PGA1_c06710 0.72 +0.1 689,873 + -0.9 689,892 + -0.1 689,900 - -0.0 690,033 + -0.2 690,041 - +0.5 690,041 - +0.8 690,110 - PGA1_c06720 0.14 +0.5 690,118 + PGA1_c06720 0.15 +0.5 690,118 + PGA1_c06720 0.15 -1.5 690,126 - PGA1_c06720 0.17 -2.2 690,126 - PGA1_c06720 0.17 -1.7 690,126 - PGA1_c06720 0.17 -0.9 690,126 - PGA1_c06720 0.17 -1.9 690,133 - PGA1_c06720 0.19 -1.5 690,136 + PGA1_c06720 0.20 -1.5 690,138 - PGA1_c06720 0.20 -1.9 690,144 - PGA1_c06720 0.22 -1.6 690,173 + PGA1_c06720 0.28 +0.1 690,173 + PGA1_c06720 0.28 -1.0 690,173 + PGA1_c06720 0.28 -0.7 690,226 + PGA1_c06720 0.41 +0.3 690,252 - PGA1_c06720 0.47 -1.2 690,264 - PGA1_c06720 0.50 -1.5 690,272 + PGA1_c06720 0.52 -1.4 690,300 + PGA1_c06720 0.58 +0.1 690,327 + PGA1_c06720 0.65 -1.7 690,327 + PGA1_c06720 0.65 -1.1 690,335 - PGA1_c06720 0.66 -1.2 690,335 - PGA1_c06720 0.66 -0.6 690,464 - +1.3 690,476 + -0.3 690,493 + +1.0 690,493 + -0.0 690,602 - -1.0 690,655 + -0.8 690,663 - +1.1 690,756 + -0.7 690,769 - +0.4 690,788 + +1.3 690,806 - +0.1 690,826 - -0.3 690,869 - -1.3 690,876 + -0.9 690,886 + -1.9 690,894 - +0.1 690,901 + +2.1 690,909 - -0.9 690,933 + +0.2 690,993 - +0.7 691,063 - +0.7 691,093 + PGA1_c06730 0.11 +1.1 691,111 - PGA1_c06730 0.12 +1.1 691,138 - PGA1_c06730 0.13 +1.1 691,164 - PGA1_c06730 0.15 +1.1 691,175 + PGA1_c06730 0.15 +0.7 691,175 + PGA1_c06730 0.15 +1.7 691,175 + PGA1_c06730 0.15 +0.1 691,175 + PGA1_c06730 0.15 -2.5 691,183 - PGA1_c06730 0.16 +0.7 691,300 + PGA1_c06730 0.22 -0.7 691,331 + PGA1_c06730 0.23 +2.1 691,390 + PGA1_c06730 0.26 -1.1 691,390 + PGA1_c06730 0.26 -2.1 691,398 - PGA1_c06730 0.27 -0.6 691,398 - PGA1_c06730 0.27 -0.7 691,455 - PGA1_c06730 0.30 +0.1 691,462 + PGA1_c06730 0.30 -0.8 691,472 + PGA1_c06730 0.31 +1.0 691,472 + PGA1_c06730 0.31 -1.1 691,472 + PGA1_c06730 0.31 +0.4 691,472 + PGA1_c06730 0.31 -0.7
Or see this region's nucleotide sequence