Experiment: DinoMM minimal media with L-Threonine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c00530 and PGA1_c00540 are separated by 5 nucleotides PGA1_c00540 and PGA1_c00550 are separated by 150 nucleotides PGA1_c00550 and PGA1_c00570 are separated by 4 nucleotides
PGA1_c00530: PGA1_c00530 - Phosphotransferase enzyme family., at 56,962 to 57,990
_c00530
PGA1_c00540: PGA1_c00540 - putative 16S rRNA-processing protein RimM, at 57,996 to 58,499
_c00540
PGA1_c00550: PGA1_c00550 - putative cob(II)yrinic acid a,c-diamide reductase, at 58,650 to 59,291
_c00550
PGA1_c00570: PGA1_c00570 - 30S ribosomal protein S16, at 59,296 to 59,655
_c00570
Position (kb) 57
58
59 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 57.010 kb on + strand at 57.010 kb on + strand at 57.018 kb on - strand at 57.018 kb on - strand at 57.018 kb on - strand at 57.018 kb on - strand at 57.020 kb on + strand at 57.058 kb on + strand at 57.065 kb on - strand, within PGA1_c00530 at 57.102 kb on - strand, within PGA1_c00530 at 57.108 kb on + strand, within PGA1_c00530 at 57.115 kb on - strand, within PGA1_c00530 at 57.116 kb on - strand, within PGA1_c00530 at 57.128 kb on + strand, within PGA1_c00530 at 57.202 kb on - strand, within PGA1_c00530 at 57.204 kb on + strand, within PGA1_c00530 at 57.212 kb on - strand, within PGA1_c00530 at 57.252 kb on + strand, within PGA1_c00530 at 57.252 kb on + strand, within PGA1_c00530 at 57.289 kb on + strand, within PGA1_c00530 at 57.289 kb on + strand, within PGA1_c00530 at 57.289 kb on + strand, within PGA1_c00530 at 57.289 kb on + strand, within PGA1_c00530 at 57.299 kb on + strand, within PGA1_c00530 at 57.317 kb on + strand, within PGA1_c00530 at 57.330 kb on - strand, within PGA1_c00530 at 57.331 kb on + strand, within PGA1_c00530 at 57.335 kb on - strand, within PGA1_c00530 at 57.341 kb on + strand, within PGA1_c00530 at 57.351 kb on + strand, within PGA1_c00530 at 57.351 kb on + strand, within PGA1_c00530 at 57.361 kb on + strand, within PGA1_c00530 at 57.376 kb on - strand, within PGA1_c00530 at 57.388 kb on - strand, within PGA1_c00530 at 57.423 kb on + strand, within PGA1_c00530 at 57.423 kb on + strand, within PGA1_c00530 at 57.423 kb on + strand, within PGA1_c00530 at 57.426 kb on - strand, within PGA1_c00530 at 57.428 kb on + strand, within PGA1_c00530 at 57.428 kb on + strand, within PGA1_c00530 at 57.431 kb on - strand, within PGA1_c00530 at 57.456 kb on - strand, within PGA1_c00530 at 57.459 kb on + strand, within PGA1_c00530 at 57.460 kb on + strand, within PGA1_c00530 at 57.467 kb on - strand, within PGA1_c00530 at 57.467 kb on - strand, within PGA1_c00530 at 57.480 kb on - strand, within PGA1_c00530 at 57.492 kb on + strand, within PGA1_c00530 at 57.514 kb on - strand, within PGA1_c00530 at 57.515 kb on + strand, within PGA1_c00530 at 57.540 kb on + strand, within PGA1_c00530 at 57.540 kb on + strand, within PGA1_c00530 at 57.540 kb on - strand, within PGA1_c00530 at 57.542 kb on + strand, within PGA1_c00530 at 57.561 kb on + strand, within PGA1_c00530 at 57.561 kb on + strand, within PGA1_c00530 at 57.586 kb on + strand, within PGA1_c00530 at 57.605 kb on + strand, within PGA1_c00530 at 57.613 kb on - strand, within PGA1_c00530 at 57.613 kb on - strand, within PGA1_c00530 at 57.640 kb on + strand, within PGA1_c00530 at 57.640 kb on + strand, within PGA1_c00530 at 57.640 kb on + strand, within PGA1_c00530 at 57.640 kb on + strand, within PGA1_c00530 at 57.648 kb on - strand, within PGA1_c00530 at 57.664 kb on - strand, within PGA1_c00530 at 57.737 kb on + strand, within PGA1_c00530 at 57.737 kb on - strand, within PGA1_c00530 at 57.745 kb on - strand, within PGA1_c00530 at 57.745 kb on - strand, within PGA1_c00530 at 57.745 kb on - strand, within PGA1_c00530 at 57.806 kb on + strand, within PGA1_c00530 at 57.816 kb on + strand, within PGA1_c00530 at 57.816 kb on + strand, within PGA1_c00530 at 57.824 kb on - strand, within PGA1_c00530 at 57.824 kb on - strand, within PGA1_c00530 at 57.885 kb on + strand, within PGA1_c00530 at 57.887 kb on + strand, within PGA1_c00530 at 57.887 kb on + strand, within PGA1_c00530 at 57.890 kb on - strand at 57.892 kb on + strand at 57.895 kb on - strand at 57.895 kb on - strand at 57.895 kb on - strand at 57.895 kb on - strand at 57.895 kb on - strand at 57.895 kb on - strand at 57.895 kb on - strand at 57.900 kb on - strand at 57.979 kb on + strand at 57.987 kb on - strand at 57.994 kb on + strand at 58.002 kb on - strand at 58.002 kb on - strand at 58.510 kb on - strand at 58.520 kb on - strand at 58.528 kb on - strand at 58.530 kb on - strand at 58.543 kb on - strand at 58.556 kb on + strand at 58.564 kb on - strand at 58.591 kb on - strand at 58.633 kb on + strand at 58.640 kb on + strand at 58.643 kb on - strand at 58.682 kb on + strand at 58.690 kb on - strand at 58.830 kb on + strand, within PGA1_c00550 at 58.832 kb on - strand, within PGA1_c00550 at 58.837 kb on - strand, within PGA1_c00550 at 58.837 kb on - strand, within PGA1_c00550 at 58.850 kb on + strand, within PGA1_c00550 at 58.855 kb on + strand, within PGA1_c00550 at 58.855 kb on + strand, within PGA1_c00550 at 58.855 kb on + strand, within PGA1_c00550 at 58.863 kb on - strand, within PGA1_c00550 at 58.863 kb on - strand, within PGA1_c00550 at 58.863 kb on - strand, within PGA1_c00550 at 58.880 kb on + strand, within PGA1_c00550 at 58.908 kb on + strand, within PGA1_c00550 at 59.000 kb on + strand, within PGA1_c00550 at 59.010 kb on + strand, within PGA1_c00550 at 59.159 kb on + strand, within PGA1_c00550 at 59.190 kb on - strand, within PGA1_c00550
Per-strain Table
Position Strand Gene LocusTag Fraction DinoMM minimal media with L-Threonine remove 57,010 + +0.5 57,010 + -1.3 57,018 - +1.1 57,018 - +0.1 57,018 - -1.9 57,018 - +1.2 57,020 + -1.1 57,058 + -2.1 57,065 - PGA1_c00530 0.10 -0.1 57,102 - PGA1_c00530 0.14 -0.6 57,108 + PGA1_c00530 0.14 +0.4 57,115 - PGA1_c00530 0.15 +0.5 57,116 - PGA1_c00530 0.15 +0.8 57,128 + PGA1_c00530 0.16 +2.0 57,202 - PGA1_c00530 0.23 -1.8 57,204 + PGA1_c00530 0.24 -0.4 57,212 - PGA1_c00530 0.24 +0.6 57,252 + PGA1_c00530 0.28 -0.6 57,252 + PGA1_c00530 0.28 +1.8 57,289 + PGA1_c00530 0.32 -0.2 57,289 + PGA1_c00530 0.32 -1.3 57,289 + PGA1_c00530 0.32 -0.6 57,289 + PGA1_c00530 0.32 +0.0 57,299 + PGA1_c00530 0.33 +1.0 57,317 + PGA1_c00530 0.34 -0.7 57,330 - PGA1_c00530 0.36 -3.3 57,331 + PGA1_c00530 0.36 +0.2 57,335 - PGA1_c00530 0.36 +1.5 57,341 + PGA1_c00530 0.37 -0.1 57,351 + PGA1_c00530 0.38 +1.5 57,351 + PGA1_c00530 0.38 -0.8 57,361 + PGA1_c00530 0.39 +1.2 57,376 - PGA1_c00530 0.40 +1.7 57,388 - PGA1_c00530 0.41 -0.8 57,423 + PGA1_c00530 0.45 -1.2 57,423 + PGA1_c00530 0.45 -2.6 57,423 + PGA1_c00530 0.45 +0.2 57,426 - PGA1_c00530 0.45 +0.5 57,428 + PGA1_c00530 0.45 -1.7 57,428 + PGA1_c00530 0.45 -2.3 57,431 - PGA1_c00530 0.46 -0.6 57,456 - PGA1_c00530 0.48 -0.3 57,459 + PGA1_c00530 0.48 -0.4 57,460 + PGA1_c00530 0.48 -1.3 57,467 - PGA1_c00530 0.49 -0.7 57,467 - PGA1_c00530 0.49 +0.2 57,480 - PGA1_c00530 0.50 +1.5 57,492 + PGA1_c00530 0.52 +1.4 57,514 - PGA1_c00530 0.54 -0.9 57,515 + PGA1_c00530 0.54 -0.8 57,540 + PGA1_c00530 0.56 -0.1 57,540 + PGA1_c00530 0.56 +0.0 57,540 - PGA1_c00530 0.56 -0.8 57,542 + PGA1_c00530 0.56 -0.1 57,561 + PGA1_c00530 0.58 +0.5 57,561 + PGA1_c00530 0.58 +0.0 57,586 + PGA1_c00530 0.61 +0.1 57,605 + PGA1_c00530 0.62 -1.0 57,613 - PGA1_c00530 0.63 -0.8 57,613 - PGA1_c00530 0.63 -1.1 57,640 + PGA1_c00530 0.66 -0.3 57,640 + PGA1_c00530 0.66 -0.3 57,640 + PGA1_c00530 0.66 -0.6 57,640 + PGA1_c00530 0.66 -0.2 57,648 - PGA1_c00530 0.67 -0.1 57,664 - PGA1_c00530 0.68 +0.5 57,737 + PGA1_c00530 0.75 -1.1 57,737 - PGA1_c00530 0.75 +0.8 57,745 - PGA1_c00530 0.76 -0.3 57,745 - PGA1_c00530 0.76 -0.9 57,745 - PGA1_c00530 0.76 +3.0 57,806 + PGA1_c00530 0.82 +0.1 57,816 + PGA1_c00530 0.83 -0.5 57,816 + PGA1_c00530 0.83 +1.4 57,824 - PGA1_c00530 0.84 +0.9 57,824 - PGA1_c00530 0.84 +0.7 57,885 + PGA1_c00530 0.90 +0.4 57,887 + PGA1_c00530 0.90 -0.1 57,887 + PGA1_c00530 0.90 +1.8 57,890 - -0.4 57,892 + +0.7 57,895 - -1.3 57,895 - -0.6 57,895 - +1.0 57,895 - -0.6 57,895 - +0.2 57,895 - -0.9 57,895 - +2.0 57,900 - -0.1 57,979 + -0.6 57,987 - -0.3 57,994 + +1.1 58,002 - -0.6 58,002 - +0.3 58,510 - +1.2 58,520 - -1.3 58,528 - -1.9 58,530 - +2.2 58,543 - -0.9 58,556 + +1.2 58,564 - -0.8 58,591 - -0.3 58,633 + -0.8 58,640 + -0.7 58,643 - -0.5 58,682 + +0.2 58,690 - -0.2 58,830 + PGA1_c00550 0.28 -1.1 58,832 - PGA1_c00550 0.28 +0.7 58,837 - PGA1_c00550 0.29 -0.3 58,837 - PGA1_c00550 0.29 -1.6 58,850 + PGA1_c00550 0.31 +0.1 58,855 + PGA1_c00550 0.32 -0.3 58,855 + PGA1_c00550 0.32 +0.6 58,855 + PGA1_c00550 0.32 -1.1 58,863 - PGA1_c00550 0.33 +0.9 58,863 - PGA1_c00550 0.33 -0.2 58,863 - PGA1_c00550 0.33 +0.2 58,880 + PGA1_c00550 0.36 -0.8 58,908 + PGA1_c00550 0.40 -0.2 59,000 + PGA1_c00550 0.55 -0.3 59,010 + PGA1_c00550 0.56 +0.7 59,159 + PGA1_c00550 0.79 -1.3 59,190 - PGA1_c00550 0.84 +0.9
Or see this region's nucleotide sequence