Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c20570

Experiment: DinoMM minimal media with L-Threonine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	DinoMM minimal media with L-Threonine
2,131,603	+		PGA1_c20550	0.50	-0.5
2,131,611	-		PGA1_c20550	0.52	+0.1
2,131,611	-		PGA1_c20550	0.52	+0.4
2,131,649	+		PGA1_c20550	0.60	+1.1
2,131,667	+		PGA1_c20550	0.64	+0.3
2,131,675	-		PGA1_c20550	0.66	-0.8
2,131,679	+		PGA1_c20550	0.67	-2.3
2,131,683	-		PGA1_c20550	0.68	+1.4
2,131,685	+		PGA1_c20550	0.68	+1.1
2,131,694	+		PGA1_c20550	0.70	+0.1
2,131,695	+		PGA1_c20550	0.70	+0.1
2,131,702	-		PGA1_c20550	0.72	-0.1
2,131,709	+		PGA1_c20550	0.73	+0.3
2,131,715	+		PGA1_c20550	0.75	+1.1
2,131,715	+		PGA1_c20550	0.75	+0.2
2,131,718	-		PGA1_c20550	0.75	+0.6
2,131,723	-		PGA1_c20550	0.76	+0.4
2,131,723	-		PGA1_c20550	0.76	-0.2
2,131,741	-		PGA1_c20550	0.80	-1.0
2,131,754	-		PGA1_c20550	0.83	-0.8
2,131,765	+		PGA1_c20550	0.85	-0.9
2,131,765	+		PGA1_c20550	0.85	+0.3
2,131,773	-		PGA1_c20550	0.87	+0.6
2,131,773	-		PGA1_c20550	0.87	-0.2
2,131,783	+		PGA1_c20550	0.89	-0.6
2,131,783	+		PGA1_c20550	0.89	+0.1
2,131,783	+		PGA1_c20550	0.89	+0.9
2,131,783	+		PGA1_c20550	0.89	+1.2
2,131,783	+		PGA1_c20550	0.89	-0.6
2,131,785	+				-1.3
2,131,785	+				+2.1
2,131,790	+				-0.7
2,131,791	-				+1.9
2,131,791	-				+0.8
2,131,791	-				-0.2
2,131,791	-				+0.8
2,131,793	-				+0.6
2,131,804	+				+0.4
2,131,804	+				-0.0
2,131,804	+				-1.0
2,131,812	+				-0.0
2,131,812	+				+0.1
2,131,812	-				-0.5
2,131,812	-				+0.1
2,131,812	-				+2.1
2,131,812	-				-0.9
2,131,814	+				-1.5
2,131,814	+				-1.4
2,131,817	+				+1.1
2,131,817	+				+0.3
2,131,822	-				-2.2
2,131,840	+				-1.4
2,131,840	+				-1.6
2,131,840	+				-0.1
2,131,840	+				-0.8
2,131,840	+				+1.1
2,131,840	+				-0.1
2,131,840	+				+1.0
2,131,848	-				-1.2
2,131,848	-				-1.3
2,131,848	-				+2.1
2,131,848	-				-1.9
2,131,848	-				+1.1
2,131,848	-				-0.1
2,131,848	-				-0.5
2,131,848	-				-1.5
2,131,874	+				+0.6
2,131,894	-		PGA1_c20560	0.11	+0.1
2,131,917	+		PGA1_c20560	0.14	-1.3
2,131,920	-		PGA1_c20560	0.15	+1.1
2,131,920	-		PGA1_c20560	0.15	+0.3
2,131,938	+		PGA1_c20560	0.17	-0.7
2,131,947	-		PGA1_c20560	0.18	+1.1
2,131,982	-		PGA1_c20560	0.23	+1.1
2,131,990	-		PGA1_c20560	0.25	-0.3
2,132,010	+		PGA1_c20560	0.27	-0.2
2,132,013	-		PGA1_c20560	0.28	-1.5
2,132,013	-		PGA1_c20560	0.28	-1.2
2,132,018	+		PGA1_c20560	0.29	+1.5
2,132,021	-		PGA1_c20560	0.29	+0.3
2,132,029	-		PGA1_c20560	0.30	-1.0
2,132,057	+		PGA1_c20560	0.34	+0.4
2,132,060	-		PGA1_c20560	0.35	+1.6
2,132,060	-		PGA1_c20560	0.35	-0.5
2,132,060	-		PGA1_c20560	0.35	+0.5
2,132,062	+		PGA1_c20560	0.35	-0.8
2,132,062	+		PGA1_c20560	0.35	+0.5
2,132,062	+		PGA1_c20560	0.35	+0.5
2,132,099	+		PGA1_c20560	0.40	+0.4
2,132,158	-		PGA1_c20560	0.49	+0.5
2,132,160	-		PGA1_c20560	0.49	-1.0
2,132,171	+		PGA1_c20560	0.51	-0.9
2,132,171	+		PGA1_c20560	0.51	-0.6
2,132,171	+		PGA1_c20560	0.51	+0.0
2,132,179	-		PGA1_c20560	0.52	-1.1
2,132,179	-		PGA1_c20560	0.52	-0.9
2,132,179	-		PGA1_c20560	0.52	-0.9
2,132,179	-		PGA1_c20560	0.52	-0.4
2,132,195	-		PGA1_c20560	0.54	-0.9
2,132,227	+		PGA1_c20560	0.59	-0.1
2,132,247	-		PGA1_c20560	0.61	+0.4
2,132,250	+		PGA1_c20560	0.62	-0.5
2,132,258	-		PGA1_c20560	0.63	-0.2
2,132,258	-		PGA1_c20560	0.63	+1.2
2,132,264	+		PGA1_c20560	0.64	+1.0
2,132,270	+		PGA1_c20560	0.65	+0.5
2,132,272	-		PGA1_c20560	0.65	+1.2
2,132,272	-		PGA1_c20560	0.65	+0.0
2,132,272	-		PGA1_c20560	0.65	-1.0
2,132,272	-		PGA1_c20560	0.65	-1.5
2,132,272	-		PGA1_c20560	0.65	-0.5
2,132,272	-		PGA1_c20560	0.65	+0.3
2,132,272	-		PGA1_c20560	0.65	-1.3
2,132,272	-		PGA1_c20560	0.65	+0.1
2,132,278	-		PGA1_c20560	0.66	-0.6
2,132,279	+		PGA1_c20560	0.66	-0.4
2,132,280	-		PGA1_c20560	0.66	-1.0
2,132,280	-		PGA1_c20560	0.66	-0.9
2,132,280	-		PGA1_c20560	0.66	-2.9
2,132,287	-		PGA1_c20560	0.67	-0.5
2,132,294	+		PGA1_c20560	0.68	+1.5
2,132,297	-		PGA1_c20560	0.69	-1.5
2,132,297	-		PGA1_c20560	0.69	+1.1
2,132,302	-		PGA1_c20560	0.69	-0.0
2,132,302	-		PGA1_c20560	0.69	-1.5
2,132,328	+		PGA1_c20560	0.73	-0.4
2,132,379	+		PGA1_c20560	0.80	+0.7
2,132,383	-		PGA1_c20560	0.81	-1.3
2,132,391	-		PGA1_c20560	0.82	-0.5
2,132,397	-		PGA1_c20560	0.83	+1.7
2,132,400	+		PGA1_c20560	0.83	+0.9
2,132,426	-		PGA1_c20560	0.87	-0.5
2,132,426	-		PGA1_c20560	0.87	+0.1
2,132,464	-				-1.0
2,132,467	+				-0.4
2,132,467	+				-0.8
2,132,467	+				-1.5
2,132,467	+				+0.6
2,132,467	+				+0.4
2,132,467	+				+0.1
2,132,467	+				-0.1
2,132,467	+				-2.2
2,132,467	+				+0.9
2,132,467	+				-0.4
2,132,467	+				+1.2
2,132,467	+				-0.0
2,132,467	+				+0.1
2,132,467	+				-1.1
2,132,467	+				+0.5
2,132,467	+				+0.7
2,132,467	+				+0.8
2,132,475	-				+1.1
2,132,475	-				+1.8
2,132,475	-				+0.8
2,132,475	-				+0.4
2,132,475	-				+0.7
2,132,475	-				+2.3
2,132,475	-				+0.3
2,132,475	-				+0.4
2,132,475	-				+0.0
2,132,475	-				+1.7
2,132,475	-				-0.2
2,132,475	-				-0.7
2,132,475	-				+0.4
2,132,475	-				+0.3
2,132,486	-				+0.5
2,132,489	+				-0.5
2,132,489	+				+0.0
2,132,492	-				+2.4
2,132,497	-				-0.1
2,132,522	+				-1.1
2,132,522	+				-0.4
2,132,530	-				+1.2
2,132,530	-				-0.3
2,132,559	+				+1.1
2,132,590	+				-1.0
2,132,598	-				-0.3
2,132,598	-				-0.6
2,132,598	-				-0.5
2,132,605	+				+0.4
2,132,608	-				+0.1
2,132,611	-				+0.0
2,132,613	-				-0.1
2,132,613	-				+0.2
2,132,613	-				+1.5
2,132,615	+				+0.3
2,132,623	-				+0.0
2,132,623	-				+0.4
2,132,648	+				-0.0
2,132,655	+				-0.3
2,132,704	-				+0.5
2,132,719	-		PGA1_c20570	0.11	-0.2
2,132,729	-		PGA1_c20570	0.12	-0.9
2,132,729	-		PGA1_c20570	0.12	-0.9
2,132,757	+		PGA1_c20570	0.15	-2.1
2,132,883	+		PGA1_c20570	0.26	+0.3
2,132,883	+		PGA1_c20570	0.26	-0.3
2,133,003	-		PGA1_c20570	0.36	-1.2
2,133,140	+		PGA1_c20570	0.48	-0.3
2,133,148	-		PGA1_c20570	0.49	-1.1
2,133,153	-		PGA1_c20570	0.50	+0.1
2,133,519	-		PGA1_c20570	0.82	-1.1
2,133,660	+				-0.3
2,133,683	-				-0.9
2,133,730	+				+0.4
2,133,748	-				+1.7
2,133,787	+				-1.5
2,133,802	-				-1.2
2,133,864	+				-0.9
2,133,872	-				+0.3
2,133,954	+				+1.3
2,133,964	+				-1.2
2,133,964	+				+0.7
2,134,082	+				-0.3
2,134,082	+				+0.1
2,134,082	+				+0.4
2,134,090	-				+0.9
2,134,090	-				+0.1
2,134,090	-				+0.1
2,134,090	-				+1.1
2,134,097	-				+0.8
2,134,103	+				-0.1
2,134,121	-				+1.1
2,134,121	-				-0.5
2,134,142	+				-0.1
2,134,209	-		PGA1_c20580	0.16	+0.4
2,134,210	+		PGA1_c20580	0.16	+0.1
2,134,232	+		PGA1_c20580	0.18	+0.1
2,134,258	-		PGA1_c20580	0.21	-1.2
2,134,269	+		PGA1_c20580	0.22	-2.1
2,134,277	-		PGA1_c20580	0.23	+1.4
2,134,308	-		PGA1_c20580	0.27	-0.8
2,134,325	+		PGA1_c20580	0.29	-0.7
2,134,348	+		PGA1_c20580	0.31	+0.9
2,134,364	-		PGA1_c20580	0.33	+0.1
2,134,438	+		PGA1_c20580	0.41	-0.0
2,134,451	-		PGA1_c20580	0.43	-1.1
2,134,471	-		PGA1_c20580	0.45	-0.2
2,134,489	+		PGA1_c20580	0.47	-1.5
2,134,497	+		PGA1_c20580	0.48	+0.5
2,134,562	-		PGA1_c20580	0.55	-2.9
2,134,598	-		PGA1_c20580	0.59	-1.5
2,134,635	-		PGA1_c20580	0.63	+1.3
2,134,673	+		PGA1_c20580	0.67	+0.3
2,134,696	-		PGA1_c20580	0.70	-1.0
2,134,696	-		PGA1_c20580	0.70	-2.1
2,134,696	-		PGA1_c20580	0.70	+1.1
2,134,701	-		PGA1_c20580	0.71	+0.5