Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c01140

Experiment: DinoMM minimal media with L-Threonine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	DinoMM minimal media with L-Threonine
105,651	+				+0.9
105,707	-				-0.7
105,737	-				-1.0
105,737	-				+0.7
105,737	-				+0.3
105,745	-				-0.1
105,782	+		PGA1_c01130	0.13	+0.1
105,790	-		PGA1_c01130	0.14	+0.9
105,790	-		PGA1_c01130	0.14	+0.9
105,823	-		PGA1_c01130	0.18	+0.5
105,833	-		PGA1_c01130	0.19	+0.0
105,880	+		PGA1_c01130	0.24	+0.4
105,910	-		PGA1_c01130	0.28	+0.6
105,935	+		PGA1_c01130	0.30	-2.1
106,001	+		PGA1_c01130	0.38	-1.0
106,001	+		PGA1_c01130	0.38	+0.1
106,009	-		PGA1_c01130	0.39	+1.6
106,069	+		PGA1_c01130	0.45	-0.1
106,112	+		PGA1_c01130	0.50	-0.1
106,135	-		PGA1_c01130	0.53	+0.1
106,145	+		PGA1_c01130	0.54	-0.9
106,153	-		PGA1_c01130	0.55	-0.5
106,207	-		PGA1_c01130	0.61	-0.2
106,247	+		PGA1_c01130	0.65	-0.6
106,254	-		PGA1_c01130	0.66	-0.4
106,255	-		PGA1_c01130	0.66	+2.2
106,277	+		PGA1_c01130	0.68	-0.2
106,311	-		PGA1_c01130	0.72	+0.7
106,369	+		PGA1_c01130	0.79	+1.4
106,380	+		PGA1_c01130	0.80	+0.5
106,384	+		PGA1_c01130	0.80	-0.8
106,463	+		PGA1_c01130	0.89	-1.6
106,498	+				-0.9
106,507	-				+0.7
106,537	-				-1.1
106,548	+				+0.2
106,553	+				-0.5
106,553	+				-0.4
106,556	-				+0.7
106,601	+				+0.2
106,601	+				+1.2
106,633	-				-0.3
106,636	-				+0.4
106,651	+				-2.2
106,651	+				-0.8
106,659	-				+0.9
106,677	-				-1.6
106,685	+				-2.2
106,888	-		PGA1_c01140	0.16	+0.2
106,942	+		PGA1_c01140	0.19	-0.3
107,014	-		PGA1_c01140	0.24	-2.3
107,033	+		PGA1_c01140	0.25	-2.3
107,160	-		PGA1_c01140	0.33	-3.2
107,165	+		PGA1_c01140	0.33	-2.8
107,721	+		PGA1_c01140	0.68	-2.2
107,757	+		PGA1_c01140	0.70	-2.2
107,811	+		PGA1_c01140	0.74	+0.2
107,814	-		PGA1_c01140	0.74	-3.2
107,819	-		PGA1_c01140	0.74	-0.8
107,839	+		PGA1_c01140	0.75	-2.5
107,839	+		PGA1_c01140	0.75	-2.3
107,847	-		PGA1_c01140	0.76	-1.6
107,914	+		PGA1_c01140	0.80	-1.6
107,930	+		PGA1_c01140	0.81	-3.1
107,930	+		PGA1_c01140	0.81	-2.5
107,960	+		PGA1_c01140	0.83	-2.5
107,982	-		PGA1_c01140	0.84	-0.3
108,052	-		PGA1_c01140	0.89	-1.6
108,120	+				-3.5
108,128	-				-2.1
108,128	-				-3.2
108,153	-				-3.7
108,179	-				-1.9
108,194	-				-0.3
108,256	+				-3.3
108,256	-				-3.2
108,265	-				-2.7
108,324	+				+2.8
108,338	+				-3.1
108,350	+				-1.6
108,350	+				-2.3
108,350	+				+1.2
108,350	+				+0.2
108,350	+				-1.1
108,350	+				-1.5
108,350	+				-2.9
108,358	-				-0.8
108,358	-				-0.9
108,358	-				-3.1
108,358	-				-2.5
108,360	+				-1.9
108,360	+				-0.5
108,360	+				-3.2
108,368	-				-2.3
108,368	-				-3.4
108,368	-				-1.6
108,479	+				+0.5
108,480	+				-0.6
108,488	-				+1.2
108,498	-				+0.8
108,527	+				+0.5
108,548	-				+2.2
108,564	+				+1.0
108,564	+				+1.2
108,564	+				+1.0
108,564	+				+2.4
108,567	-				+0.9
108,572	-				-0.1
108,572	-				+1.3
108,572	-				+0.9
108,572	-				+0.7
108,572	-				+1.2
108,575	+				+2.8
108,583	-				+1.9
108,583	-				+0.5
108,583	-				+1.2
108,583	-				-0.1
108,601	-				+0.1
108,616	-				+1.2
108,639	+				+0.7
108,639	+				-0.9
108,639	+				+0.7
108,639	+				+1.4
108,639	-				+0.7
108,641	-				+2.5
108,647	+				+1.2
108,647	-				+0.8
108,647	-				+3.1
108,647	-				+0.2
108,647	-				+1.2
108,647	-				+1.2
108,647	-				-0.8
108,654	-		PGA1_c01150	0.10	+1.0
108,654	-		PGA1_c01150	0.10	+1.5
108,655	-		PGA1_c01150	0.11	+0.7
108,655	-		PGA1_c01150	0.11	+1.3
108,662	+		PGA1_c01150	0.12	+0.9
108,662	-		PGA1_c01150	0.12	+1.4
108,662	-		PGA1_c01150	0.12	+1.2
108,678	-		PGA1_c01150	0.14	+1.4
108,689	+		PGA1_c01150	0.15	+1.0
108,689	+		PGA1_c01150	0.15	+0.5
108,726	-		PGA1_c01150	0.21	-0.6
108,759	+		PGA1_c01150	0.25	+1.1
108,759	+		PGA1_c01150	0.25	+0.8
108,767	-		PGA1_c01150	0.26	+0.9
108,767	-		PGA1_c01150	0.26	+1.2
108,767	-		PGA1_c01150	0.26	+0.9
108,767	-		PGA1_c01150	0.26	+1.0
108,825	-		PGA1_c01150	0.35	+0.2
108,842	+		PGA1_c01150	0.37	+0.5
108,842	+		PGA1_c01150	0.37	+0.7
108,850	-		PGA1_c01150	0.38	-0.3
108,853	+		PGA1_c01150	0.39	+1.6
108,853	+		PGA1_c01150	0.39	+0.7
108,853	+		PGA1_c01150	0.39	+1.1
108,861	-		PGA1_c01150	0.40	+2.2
108,864	-		PGA1_c01150	0.40	+1.4
108,871	-		PGA1_c01150	0.41	+2.3
108,906	-		PGA1_c01150	0.46	-0.1
108,906	-		PGA1_c01150	0.46	+0.8
108,921	-		PGA1_c01150	0.48	+1.8
109,032	+		PGA1_c01150	0.64	+1.9
109,032	+		PGA1_c01150	0.64	+1.2
109,032	+		PGA1_c01150	0.64	+2.2
109,032	+		PGA1_c01150	0.64	-1.0
109,040	-		PGA1_c01150	0.65	+2.2
109,040	-		PGA1_c01150	0.65	+1.6
109,040	-		PGA1_c01150	0.65	+1.3
109,048	-		PGA1_c01150	0.67	+1.0
109,049	-		PGA1_c01150	0.67	+1.6
109,090	+		PGA1_c01150	0.73	+0.9
109,124	-		PGA1_c01150	0.77	+2.1
109,124	-		PGA1_c01150	0.77	+0.9
109,148	+		PGA1_c01150	0.81	+1.3
109,153	+		PGA1_c01150	0.81	+1.7
109,153	+		PGA1_c01150	0.81	+3.1
109,153	+		PGA1_c01150	0.81	+0.6
109,153	+		PGA1_c01150	0.81	+0.2
109,153	+		PGA1_c01150	0.81	+2.1
109,153	+		PGA1_c01150	0.81	+1.9
109,153	+		PGA1_c01150	0.81	+1.5
109,153	+		PGA1_c01150	0.81	+1.8
109,153	+		PGA1_c01150	0.81	-0.5
109,153	+		PGA1_c01150	0.81	+1.7
109,153	+		PGA1_c01150	0.81	+2.2
109,153	+		PGA1_c01150	0.81	+1.6
109,156	-		PGA1_c01150	0.82	+3.1
109,156	-		PGA1_c01150	0.82	+0.6
109,161	-		PGA1_c01150	0.83	+2.5
109,161	-		PGA1_c01150	0.83	+0.2
109,161	-		PGA1_c01150	0.83	+3.1
109,161	-		PGA1_c01150	0.83	+2.1
109,161	-		PGA1_c01150	0.83	+1.0
109,161	-		PGA1_c01150	0.83	+2.1
109,161	-		PGA1_c01150	0.83	+0.9
109,161	-		PGA1_c01150	0.83	+1.9
109,161	-		PGA1_c01150	0.83	+0.3
109,161	-		PGA1_c01150	0.83	+0.7
109,161	-		PGA1_c01150	0.83	+1.1
109,161	-		PGA1_c01150	0.83	+0.8
109,161	-		PGA1_c01150	0.83	+0.6
109,161	-		PGA1_c01150	0.83	+1.6
109,166	-		PGA1_c01150	0.83	+1.7
109,166	-		PGA1_c01150	0.83	-0.9
109,173	+		PGA1_c01150	0.84	+2.7
109,194	-		PGA1_c01150	0.87	+0.9