Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS25515 and BWI76_RS25520 overlap by 1 nucleotides BWI76_RS25520 and BWI76_RS25525 are separated by 121 nucleotides BWI76_RS25525 and BWI76_RS25530 are separated by 9 nucleotides BWI76_RS25530 and BWI76_RS25535 overlap by 28 nucleotides BWI76_RS25535 and BWI76_RS25540 are separated by 10 nucleotides
BWI76_RS25515: BWI76_RS25515 - sulfoxide reductase, at 5,305,065 to 5,306,066
_RS25515
BWI76_RS25520: BWI76_RS25520 - sulfoxide reductase heme-binding subunit YedZ, at 5,306,066 to 5,306,665
_RS25520
BWI76_RS25525: BWI76_RS25525 - hypothetical protein, at 5,306,787 to 5,306,987
_RS25525
BWI76_RS25530: BWI76_RS25530 - acetyl-CoA carboxylase, at 5,306,997 to 5,307,086
_RS25530
BWI76_RS25535: BWI76_RS25535 - acetyl-CoA carboxylase biotin carboxyl carrier protein subunit, at 5,307,059 to 5,307,532
_RS25535
BWI76_RS25540: BWI76_RS25540 - acetyl-CoA carboxylase biotin carboxylase subunit, at 5,307,543 to 5,308,892
_RS25540
Position (kb) 5306
5307
5308 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5306.162 kb on - strand, within BWI76_RS25520 at 5306.346 kb on + strand, within BWI76_RS25520 at 5306.346 kb on + strand, within BWI76_RS25520 at 5306.346 kb on + strand, within BWI76_RS25520 at 5306.346 kb on + strand, within BWI76_RS25520 at 5306.346 kb on + strand, within BWI76_RS25520 at 5306.354 kb on - strand, within BWI76_RS25520 at 5306.354 kb on - strand, within BWI76_RS25520 at 5306.354 kb on - strand, within BWI76_RS25520 at 5306.354 kb on - strand, within BWI76_RS25520 at 5306.354 kb on - strand, within BWI76_RS25520 at 5306.386 kb on + strand, within BWI76_RS25520 at 5306.503 kb on + strand, within BWI76_RS25520 at 5306.575 kb on + strand, within BWI76_RS25520
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x remove 5,306,162 - BWI76_RS25520 0.16 +0.0 5,306,346 + BWI76_RS25520 0.47 +0.7 5,306,346 + BWI76_RS25520 0.47 +2.2 5,306,346 + BWI76_RS25520 0.47 -0.2 5,306,346 + BWI76_RS25520 0.47 -0.0 5,306,346 + BWI76_RS25520 0.47 -2.2 5,306,354 - BWI76_RS25520 0.48 -0.2 5,306,354 - BWI76_RS25520 0.48 -0.2 5,306,354 - BWI76_RS25520 0.48 +1.3 5,306,354 - BWI76_RS25520 0.48 +0.2 5,306,354 - BWI76_RS25520 0.48 +2.4 5,306,386 + BWI76_RS25520 0.53 +0.6 5,306,503 + BWI76_RS25520 0.73 +0.7 5,306,575 + BWI76_RS25520 0.85 +0.5
Or see this region's nucleotide sequence