Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS19395

Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS19390 and BWI76_RS19395 are separated by 99 nucleotidesBWI76_RS19395 and BWI76_RS19400 are separated by 2 nucleotides BWI76_RS19390: BWI76_RS19390 - LysR family transcriptional regulator, at 4,043,767 to 4,044,714 _RS19390 BWI76_RS19395: BWI76_RS19395 - adenine deaminase, at 4,044,814 to 4,046,625 _RS19395 BWI76_RS19400: BWI76_RS19400 - NCS2 family permease, at 4,046,628 to 4,047,971 _RS19400 Position (kb) 4044 4045 4046 4047Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4043.924 kb on + strand, within BWI76_RS19390at 4044.037 kb on - strand, within BWI76_RS19390at 4044.113 kb on + strand, within BWI76_RS19390at 4044.153 kb on - strand, within BWI76_RS19390at 4044.187 kb on - strand, within BWI76_RS19390at 4044.562 kb on + strand, within BWI76_RS19390at 4044.730 kb on - strandat 4044.764 kb on + strandat 4044.814 kb on - strandat 4045.078 kb on - strand, within BWI76_RS19395at 4045.363 kb on + strand, within BWI76_RS19395at 4045.402 kb on + strand, within BWI76_RS19395at 4045.569 kb on + strand, within BWI76_RS19395at 4045.695 kb on + strand, within BWI76_RS19395at 4045.879 kb on - strand, within BWI76_RS19395at 4045.928 kb on + strand, within BWI76_RS19395at 4046.039 kb on + strand, within BWI76_RS19395at 4046.100 kb on - strand, within BWI76_RS19395at 4046.116 kb on - strand, within BWI76_RS19395at 4046.118 kb on + strand, within BWI76_RS19395at 4046.369 kb on + strand, within BWI76_RS19395at 4046.485 kb on + strandat 4046.829 kb on + strand, within BWI76_RS19400at 4046.837 kb on - strand, within BWI76_RS19400at 4046.837 kb on - strand, within BWI76_RS19400at 4046.837 kb on - strand, within BWI76_RS19400at 4046.913 kb on + strand, within BWI76_RS19400at 4046.921 kb on - strand, within BWI76_RS19400at 4047.126 kb on + strand, within BWI76_RS19400at 4047.268 kb on + strand, within BWI76_RS19400at 4047.306 kb on - strand, within BWI76_RS19400at 4047.447 kb on + strand, within BWI76_RS19400

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x
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4,043,924 + BWI76_RS19390 0.17 -0.8
4,044,037 - BWI76_RS19390 0.28 +1.6
4,044,113 + BWI76_RS19390 0.36 -1.1
4,044,153 - BWI76_RS19390 0.41 -0.8
4,044,187 - BWI76_RS19390 0.44 +0.2
4,044,562 + BWI76_RS19390 0.84 -2.5
4,044,730 - +3.5
4,044,764 + -0.2
4,044,814 - +0.2
4,045,078 - BWI76_RS19395 0.15 +0.3
4,045,363 + BWI76_RS19395 0.30 -0.2
4,045,402 + BWI76_RS19395 0.32 -1.2
4,045,569 + BWI76_RS19395 0.42 +0.6
4,045,695 + BWI76_RS19395 0.49 +0.0
4,045,879 - BWI76_RS19395 0.59 -0.6
4,045,928 + BWI76_RS19395 0.61 -0.0
4,046,039 + BWI76_RS19395 0.68 +3.3
4,046,100 - BWI76_RS19395 0.71 +0.2
4,046,116 - BWI76_RS19395 0.72 +0.3
4,046,118 + BWI76_RS19395 0.72 -0.4
4,046,369 + BWI76_RS19395 0.86 -0.2
4,046,485 + +0.2
4,046,829 + BWI76_RS19400 0.15 -0.1
4,046,837 - BWI76_RS19400 0.16 -0.1
4,046,837 - BWI76_RS19400 0.16 +0.4
4,046,837 - BWI76_RS19400 0.16 +1.2
4,046,913 + BWI76_RS19400 0.21 -0.2
4,046,921 - BWI76_RS19400 0.22 +0.9
4,047,126 + BWI76_RS19400 0.37 +0.1
4,047,268 + BWI76_RS19400 0.48 +0.3
4,047,306 - BWI76_RS19400 0.50 -0.2
4,047,447 + BWI76_RS19400 0.61 +1.7

Or see this region's nucleotide sequence