Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS19390 and BWI76_RS19395 are separated by 99 nucleotides BWI76_RS19395 and BWI76_RS19400 are separated by 2 nucleotides
BWI76_RS19390: BWI76_RS19390 - LysR family transcriptional regulator, at 4,043,767 to 4,044,714
_RS19390
BWI76_RS19395: BWI76_RS19395 - adenine deaminase, at 4,044,814 to 4,046,625
_RS19395
BWI76_RS19400: BWI76_RS19400 - NCS2 family permease, at 4,046,628 to 4,047,971
_RS19400
Position (kb)
4044
4045
4046
4047 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 4043.924 kb on + strand, within BWI76_RS19390 at 4044.037 kb on - strand, within BWI76_RS19390 at 4044.113 kb on + strand, within BWI76_RS19390 at 4044.153 kb on - strand, within BWI76_RS19390 at 4044.187 kb on - strand, within BWI76_RS19390 at 4044.562 kb on + strand, within BWI76_RS19390 at 4044.730 kb on - strand at 4044.764 kb on + strand at 4044.814 kb on - strand at 4045.078 kb on - strand, within BWI76_RS19395 at 4045.363 kb on + strand, within BWI76_RS19395 at 4045.402 kb on + strand, within BWI76_RS19395 at 4045.569 kb on + strand, within BWI76_RS19395 at 4045.695 kb on + strand, within BWI76_RS19395 at 4045.879 kb on - strand, within BWI76_RS19395 at 4045.928 kb on + strand, within BWI76_RS19395 at 4046.039 kb on + strand, within BWI76_RS19395 at 4046.100 kb on - strand, within BWI76_RS19395 at 4046.116 kb on - strand, within BWI76_RS19395 at 4046.118 kb on + strand, within BWI76_RS19395 at 4046.369 kb on + strand, within BWI76_RS19395 at 4046.485 kb on + strand at 4046.829 kb on + strand, within BWI76_RS19400 at 4046.837 kb on - strand, within BWI76_RS19400 at 4046.837 kb on - strand, within BWI76_RS19400 at 4046.837 kb on - strand, within BWI76_RS19400 at 4046.913 kb on + strand, within BWI76_RS19400 at 4046.921 kb on - strand, within BWI76_RS19400 at 4047.126 kb on + strand, within BWI76_RS19400 at 4047.268 kb on + strand, within BWI76_RS19400 at 4047.306 kb on - strand, within BWI76_RS19400 at 4047.447 kb on + strand, within BWI76_RS19400
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x remove 4,043,924 + BWI76_RS19390 0.17 -0.8 4,044,037 - BWI76_RS19390 0.28 +1.6 4,044,113 + BWI76_RS19390 0.36 -1.1 4,044,153 - BWI76_RS19390 0.41 -0.8 4,044,187 - BWI76_RS19390 0.44 +0.2 4,044,562 + BWI76_RS19390 0.84 -2.5 4,044,730 - +3.5 4,044,764 + -0.2 4,044,814 - +0.2 4,045,078 - BWI76_RS19395 0.15 +0.3 4,045,363 + BWI76_RS19395 0.30 -0.2 4,045,402 + BWI76_RS19395 0.32 -1.2 4,045,569 + BWI76_RS19395 0.42 +0.6 4,045,695 + BWI76_RS19395 0.49 +0.0 4,045,879 - BWI76_RS19395 0.59 -0.6 4,045,928 + BWI76_RS19395 0.61 -0.0 4,046,039 + BWI76_RS19395 0.68 +3.3 4,046,100 - BWI76_RS19395 0.71 +0.2 4,046,116 - BWI76_RS19395 0.72 +0.3 4,046,118 + BWI76_RS19395 0.72 -0.4 4,046,369 + BWI76_RS19395 0.86 -0.2 4,046,485 + +0.2 4,046,829 + BWI76_RS19400 0.15 -0.1 4,046,837 - BWI76_RS19400 0.16 -0.1 4,046,837 - BWI76_RS19400 0.16 +0.4 4,046,837 - BWI76_RS19400 0.16 +1.2 4,046,913 + BWI76_RS19400 0.21 -0.2 4,046,921 - BWI76_RS19400 0.22 +0.9 4,047,126 + BWI76_RS19400 0.37 +0.1 4,047,268 + BWI76_RS19400 0.48 +0.3 4,047,306 - BWI76_RS19400 0.50 -0.2 4,047,447 + BWI76_RS19400 0.61 +1.7
Or see this region's nucleotide sequence