Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS18810 and BWI76_RS18815 are separated by 16 nucleotides BWI76_RS18815 and BWI76_RS18820 are separated by 55 nucleotides
BWI76_RS18810: BWI76_RS18810 - nitrogenase iron protein, at 3,901,391 to 3,902,272
_RS18810
BWI76_RS18815: BWI76_RS18815 - nitrogenase molybdenum-iron protein alpha chain, at 3,902,289 to 3,903,737
_RS18815
BWI76_RS18820: BWI76_RS18820 - nitrogenase molybdenum-iron protein subunit beta, at 3,903,793 to 3,905,355
_RS18820
Position (kb)
3902
3903
3904 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3901.401 kb on - strand at 3901.456 kb on - strand at 3901.456 kb on - strand at 3901.791 kb on - strand, within BWI76_RS18810 at 3902.172 kb on - strand, within BWI76_RS18810 at 3902.334 kb on + strand at 3902.450 kb on - strand, within BWI76_RS18815 at 3903.425 kb on - strand, within BWI76_RS18815 at 3903.471 kb on - strand, within BWI76_RS18815 at 3903.622 kb on + strand at 3903.641 kb on - strand at 3903.689 kb on - strand at 3903.864 kb on - strand at 3904.061 kb on + strand, within BWI76_RS18820 at 3904.061 kb on + strand, within BWI76_RS18820 at 3904.069 kb on - strand, within BWI76_RS18820
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x remove 3,901,401 - +0.9 3,901,456 - -1.2 3,901,456 - +0.7 3,901,791 - BWI76_RS18810 0.45 -0.1 3,902,172 - BWI76_RS18810 0.89 -0.0 3,902,334 + +2.2 3,902,450 - BWI76_RS18815 0.11 -2.1 3,903,425 - BWI76_RS18815 0.78 -1.9 3,903,471 - BWI76_RS18815 0.82 +0.1 3,903,622 + -0.1 3,903,641 - -0.2 3,903,689 - -1.1 3,903,864 - +0.3 3,904,061 + BWI76_RS18820 0.17 -0.0 3,904,061 + BWI76_RS18820 0.17 +0.2 3,904,069 - BWI76_RS18820 0.18 +1.3
Or see this region's nucleotide sequence