Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS15265 and BWI76_RS15270 are separated by 142 nucleotides BWI76_RS15270 and BWI76_RS15275 are separated by 9 nucleotides
BWI76_RS15265: BWI76_RS15265 - hypothetical protein, at 3,198,817 to 3,200,097
_RS15265
BWI76_RS15270: BWI76_RS15270 - phenazine biosynthesis protein PhzF family, at 3,200,240 to 3,201,028
_RS15270
BWI76_RS15275: BWI76_RS15275 - isomerase, at 3,201,038 to 3,201,829
_RS15275
Position (kb)
3200
3201
3202 Strain fitness (log2 ratio)
-1
0
1 at 3199.362 kb on + strand, within BWI76_RS15265 at 3199.771 kb on + strand, within BWI76_RS15265 at 3199.810 kb on + strand, within BWI76_RS15265 at 3199.825 kb on + strand, within BWI76_RS15265 at 3199.860 kb on - strand, within BWI76_RS15265 at 3199.892 kb on + strand, within BWI76_RS15265 at 3199.906 kb on - strand, within BWI76_RS15265 at 3200.165 kb on + strand at 3200.241 kb on - strand at 3200.246 kb on - strand at 3200.246 kb on - strand at 3200.653 kb on + strand, within BWI76_RS15270 at 3200.875 kb on + strand, within BWI76_RS15270 at 3200.896 kb on + strand, within BWI76_RS15270 at 3201.277 kb on - strand, within BWI76_RS15275 at 3201.401 kb on - strand, within BWI76_RS15275 at 3201.406 kb on - strand, within BWI76_RS15275 at 3201.664 kb on + strand, within BWI76_RS15275 at 3201.839 kb on - strand at 3201.924 kb on + strand at 3202.023 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x remove 3,199,362 + BWI76_RS15265 0.43 -1.3 3,199,771 + BWI76_RS15265 0.74 -0.3 3,199,810 + BWI76_RS15265 0.78 +0.8 3,199,825 + BWI76_RS15265 0.79 -0.1 3,199,860 - BWI76_RS15265 0.81 +0.5 3,199,892 + BWI76_RS15265 0.84 +0.2 3,199,906 - BWI76_RS15265 0.85 +0.1 3,200,165 + -0.0 3,200,241 - -0.1 3,200,246 - -0.5 3,200,246 - +0.6 3,200,653 + BWI76_RS15270 0.52 -1.4 3,200,875 + BWI76_RS15270 0.80 -0.5 3,200,896 + BWI76_RS15270 0.83 -1.0 3,201,277 - BWI76_RS15275 0.30 -0.2 3,201,401 - BWI76_RS15275 0.46 +0.2 3,201,406 - BWI76_RS15275 0.46 -1.3 3,201,664 + BWI76_RS15275 0.79 +0.7 3,201,839 - -0.2 3,201,924 + -0.7 3,202,023 + +0.0
Or see this region's nucleotide sequence