Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS13535 and BWI76_RS13540 are separated by 15 nucleotides BWI76_RS13540 and BWI76_RS13545 are separated by 11 nucleotides BWI76_RS13545 and BWI76_RS13550 are separated by 9 nucleotides BWI76_RS13550 and BWI76_RS13555 overlap by 17 nucleotides
BWI76_RS13535: BWI76_RS13535 - LLM class flavin-dependent oxidoreductase, at 2,822,196 to 2,823,512
_RS13535
BWI76_RS13540: BWI76_RS13540 - ABC transporter substrate-binding protein, at 2,823,528 to 2,824,469
_RS13540
BWI76_RS13545: BWI76_RS13545 - N-acetyltransferase, at 2,824,481 to 2,824,990
_RS13545
BWI76_RS13550: BWI76_RS13550 - polar amino acid ABC transporter inner membrane subunit, at 2,825,000 to 2,825,926
_RS13550
BWI76_RS13555: BWI76_RS13555 - ABC transporter, at 2,825,910 to 2,826,689
_RS13555
Position (kb)
2824
2825 Strain fitness (log2 ratio)
-1
0
1 at 2823.515 kb on - strand at 2823.781 kb on + strand, within BWI76_RS13540 at 2823.832 kb on + strand, within BWI76_RS13540 at 2823.881 kb on + strand, within BWI76_RS13540 at 2824.032 kb on + strand, within BWI76_RS13540 at 2824.100 kb on - strand, within BWI76_RS13540 at 2824.167 kb on + strand, within BWI76_RS13540 at 2824.175 kb on - strand, within BWI76_RS13540 at 2824.910 kb on + strand, within BWI76_RS13545 at 2825.210 kb on + strand, within BWI76_RS13550 at 2825.514 kb on - strand, within BWI76_RS13550 at 2825.514 kb on - strand, within BWI76_RS13550 at 2825.538 kb on - strand, within BWI76_RS13550 at 2825.652 kb on - strand, within BWI76_RS13550 at 2825.689 kb on + strand, within BWI76_RS13550 at 2825.697 kb on - strand, within BWI76_RS13550 at 2825.716 kb on - strand, within BWI76_RS13550 at 2825.791 kb on + strand, within BWI76_RS13550 at 2825.902 kb on - strand at 2825.906 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x remove 2,823,515 - -0.1 2,823,781 + BWI76_RS13540 0.27 +0.1 2,823,832 + BWI76_RS13540 0.32 +0.3 2,823,881 + BWI76_RS13540 0.37 -0.5 2,824,032 + BWI76_RS13540 0.54 +0.8 2,824,100 - BWI76_RS13540 0.61 -0.3 2,824,167 + BWI76_RS13540 0.68 +1.5 2,824,175 - BWI76_RS13540 0.69 -0.1 2,824,910 + BWI76_RS13545 0.84 +0.9 2,825,210 + BWI76_RS13550 0.23 +0.0 2,825,514 - BWI76_RS13550 0.55 +1.4 2,825,514 - BWI76_RS13550 0.55 -0.7 2,825,538 - BWI76_RS13550 0.58 -0.8 2,825,652 - BWI76_RS13550 0.70 -0.9 2,825,689 + BWI76_RS13550 0.74 -0.2 2,825,697 - BWI76_RS13550 0.75 +0.2 2,825,716 - BWI76_RS13550 0.77 -0.4 2,825,791 + BWI76_RS13550 0.85 +0.3 2,825,902 - +0.0 2,825,906 + +0.6
Or see this region's nucleotide sequence