Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS07450 and BWI76_RS07455 are separated by 265 nucleotides BWI76_RS07455 and BWI76_RS07460 are separated by 118 nucleotides BWI76_RS07460 and BWI76_RS07465 overlap by 1 nucleotides
BWI76_RS07450: BWI76_RS07450 - transcriptional regulator, at 1,572,658 to 1,573,524
_RS07450
BWI76_RS07455: BWI76_RS07455 - NAD(P)H nitroreductase, at 1,573,790 to 1,574,443
_RS07455
BWI76_RS07460: BWI76_RS07460 - hypothetical protein, at 1,574,562 to 1,574,930
_RS07460
BWI76_RS07465: BWI76_RS07465 - TetR family transcriptional regulator, at 1,574,930 to 1,575,511
_RS07465
Position (kb)
1573
1574
1575 Strain fitness (log2 ratio)
-1
0
1
2
3
4
5
6
7
8
9 at 1572.924 kb on + strand, within BWI76_RS07450 at 1573.171 kb on - strand, within BWI76_RS07450 at 1573.321 kb on + strand, within BWI76_RS07450 at 1573.332 kb on - strand, within BWI76_RS07450 at 1573.344 kb on + strand, within BWI76_RS07450 at 1573.430 kb on - strand, within BWI76_RS07450 at 1573.704 kb on + strand at 1573.705 kb on - strand at 1573.714 kb on + strand at 1573.827 kb on + strand at 1573.882 kb on + strand, within BWI76_RS07455 at 1573.901 kb on - strand, within BWI76_RS07455 at 1573.906 kb on - strand, within BWI76_RS07455 at 1574.160 kb on + strand, within BWI76_RS07455 at 1574.165 kb on + strand, within BWI76_RS07455 at 1574.465 kb on - strand at 1574.702 kb on + strand, within BWI76_RS07460 at 1574.900 kb on + strand at 1574.947 kb on - strand at 1575.250 kb on - strand, within BWI76_RS07465 at 1575.306 kb on + strand, within BWI76_RS07465
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x remove 1,572,924 + BWI76_RS07450 0.31 -0.0 1,573,171 - BWI76_RS07450 0.59 +0.9 1,573,321 + BWI76_RS07450 0.76 -0.5 1,573,332 - BWI76_RS07450 0.78 +1.1 1,573,344 + BWI76_RS07450 0.79 +3.9 1,573,430 - BWI76_RS07450 0.89 +0.7 1,573,704 + +0.0 1,573,705 - -0.6 1,573,714 + +1.5 1,573,827 + +0.4 1,573,882 + BWI76_RS07455 0.14 +0.5 1,573,901 - BWI76_RS07455 0.17 -0.5 1,573,906 - BWI76_RS07455 0.18 +0.1 1,574,160 + BWI76_RS07455 0.57 +0.1 1,574,165 + BWI76_RS07455 0.57 +0.3 1,574,465 - -0.8 1,574,702 + BWI76_RS07460 0.38 +0.9 1,574,900 + +1.5 1,574,947 - +4.1 1,575,250 - BWI76_RS07465 0.55 +9.6 1,575,306 + BWI76_RS07465 0.65 +8.8
Or see this region's nucleotide sequence