Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS07455

Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS07450 and BWI76_RS07455 are separated by 265 nucleotidesBWI76_RS07455 and BWI76_RS07460 are separated by 118 nucleotidesBWI76_RS07460 and BWI76_RS07465 overlap by 1 nucleotides BWI76_RS07450: BWI76_RS07450 - transcriptional regulator, at 1,572,658 to 1,573,524 _RS07450 BWI76_RS07455: BWI76_RS07455 - NAD(P)H nitroreductase, at 1,573,790 to 1,574,443 _RS07455 BWI76_RS07460: BWI76_RS07460 - hypothetical protein, at 1,574,562 to 1,574,930 _RS07460 BWI76_RS07465: BWI76_RS07465 - TetR family transcriptional regulator, at 1,574,930 to 1,575,511 _RS07465 Position (kb) 1573 1574 1575Strain fitness (log2 ratio) -1 0 1 2 3 4 5 6 7 8 9at 1572.924 kb on + strand, within BWI76_RS07450at 1573.171 kb on - strand, within BWI76_RS07450at 1573.321 kb on + strand, within BWI76_RS07450at 1573.332 kb on - strand, within BWI76_RS07450at 1573.344 kb on + strand, within BWI76_RS07450at 1573.430 kb on - strand, within BWI76_RS07450at 1573.704 kb on + strandat 1573.705 kb on - strandat 1573.714 kb on + strandat 1573.827 kb on + strandat 1573.882 kb on + strand, within BWI76_RS07455at 1573.901 kb on - strand, within BWI76_RS07455at 1573.906 kb on - strand, within BWI76_RS07455at 1574.160 kb on + strand, within BWI76_RS07455at 1574.165 kb on + strand, within BWI76_RS07455at 1574.465 kb on - strandat 1574.702 kb on + strand, within BWI76_RS07460at 1574.900 kb on + strandat 1574.947 kb on - strandat 1575.250 kb on - strand, within BWI76_RS07465at 1575.306 kb on + strand, within BWI76_RS07465

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x
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1,572,924 + BWI76_RS07450 0.31 -0.0
1,573,171 - BWI76_RS07450 0.59 +0.9
1,573,321 + BWI76_RS07450 0.76 -0.5
1,573,332 - BWI76_RS07450 0.78 +1.1
1,573,344 + BWI76_RS07450 0.79 +3.9
1,573,430 - BWI76_RS07450 0.89 +0.7
1,573,704 + +0.0
1,573,705 - -0.6
1,573,714 + +1.5
1,573,827 + +0.4
1,573,882 + BWI76_RS07455 0.14 +0.5
1,573,901 - BWI76_RS07455 0.17 -0.5
1,573,906 - BWI76_RS07455 0.18 +0.1
1,574,160 + BWI76_RS07455 0.57 +0.1
1,574,165 + BWI76_RS07455 0.57 +0.3
1,574,465 - -0.8
1,574,702 + BWI76_RS07460 0.38 +0.9
1,574,900 + +1.5
1,574,947 - +4.1
1,575,250 - BWI76_RS07465 0.55 +9.6
1,575,306 + BWI76_RS07465 0.65 +8.8

Or see this region's nucleotide sequence