Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS06970 and BWI76_RS06975 are separated by 87 nucleotides BWI76_RS06975 and BWI76_RS06980 are separated by 210 nucleotides BWI76_RS06980 and BWI76_RS06985 are separated by 91 nucleotides
BWI76_RS06970: BWI76_RS06970 - selenophosphate-dependent tRNA 2-selenouridine synthase, at 1,463,888 to 1,464,973
_RS06970
BWI76_RS06975: BWI76_RS06975 - DNA-binding transcriptional activator AllS, at 1,465,061 to 1,465,984
_RS06975
BWI76_RS06980: BWI76_RS06980 - ureidoglycolate lyase, at 1,466,195 to 1,466,677
_RS06980
BWI76_RS06985: BWI76_RS06985 - transcriptional regulator, at 1,466,769 to 1,467,587
_RS06985
Position (kb)
1465
1466 Strain fitness (log2 ratio)
-1
0
1 at 1464.424 kb on + strand, within BWI76_RS06970 at 1464.550 kb on - strand, within BWI76_RS06970 at 1464.601 kb on + strand, within BWI76_RS06970 at 1464.622 kb on - strand, within BWI76_RS06970 at 1464.637 kb on - strand, within BWI76_RS06970 at 1464.846 kb on + strand, within BWI76_RS06970 at 1464.925 kb on + strand at 1464.982 kb on + strand at 1465.048 kb on - strand at 1465.074 kb on - strand at 1465.141 kb on - strand at 1465.143 kb on + strand at 1465.208 kb on - strand, within BWI76_RS06975 at 1465.347 kb on + strand, within BWI76_RS06975 at 1465.372 kb on + strand, within BWI76_RS06975 at 1465.542 kb on - strand, within BWI76_RS06975 at 1465.646 kb on + strand, within BWI76_RS06975 at 1465.925 kb on + strand at 1465.928 kb on - strand at 1466.133 kb on + strand at 1466.152 kb on + strand at 1466.153 kb on - strand at 1466.499 kb on + strand, within BWI76_RS06980 at 1466.835 kb on + strand at 1466.978 kb on - strand, within BWI76_RS06985
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x remove 1,464,424 + BWI76_RS06970 0.49 +0.3 1,464,550 - BWI76_RS06970 0.61 -0.3 1,464,601 + BWI76_RS06970 0.66 -0.8 1,464,622 - BWI76_RS06970 0.68 -0.6 1,464,637 - BWI76_RS06970 0.69 +1.2 1,464,846 + BWI76_RS06970 0.88 +0.6 1,464,925 + -0.4 1,464,982 + -0.3 1,465,048 - +0.5 1,465,074 - +0.1 1,465,141 - +0.8 1,465,143 + +0.3 1,465,208 - BWI76_RS06975 0.16 -0.9 1,465,347 + BWI76_RS06975 0.31 +1.2 1,465,372 + BWI76_RS06975 0.34 +1.1 1,465,542 - BWI76_RS06975 0.52 +0.2 1,465,646 + BWI76_RS06975 0.63 -1.1 1,465,925 + -0.2 1,465,928 - +0.4 1,466,133 + +1.0 1,466,152 + -1.6 1,466,153 - -0.4 1,466,499 + BWI76_RS06980 0.63 -1.1 1,466,835 + -1.7 1,466,978 - BWI76_RS06985 0.26 -0.0
Or see this region's nucleotide sequence