Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS13130

Experiment: diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse17; day4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS13120 and BBR_RS13125 are separated by 89 nucleotidesBBR_RS13125 and BBR_RS13130 overlap by 11 nucleotidesBBR_RS13130 and BBR_RS13135 overlap by 8 nucleotides BBR_RS13120: BBR_RS13120 - ABC transporter permease, at 719,270 to 720,247 _RS13120 BBR_RS13125: BBR_RS13125 - ABC transporter permease, at 720,337 to 721,230 _RS13125 BBR_RS13130: BBR_RS13130 - ABC transporter ATP-binding protein, at 721,220 to 722,011 _RS13130 BBR_RS13135: BBR_RS13135 - ABC transporter ATP-binding protein, at 722,004 to 722,789 _RS13135 Position (kb) 721 722 723Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 720.228 kb on + strandat 720.321 kb on - strandat 720.507 kb on + strand, within BBR_RS13125at 720.507 kb on + strand, within BBR_RS13125at 721.197 kb on + strandat 721.202 kb on + strandat 721.616 kb on + strand, within BBR_RS13130at 721.790 kb on + strand, within BBR_RS13130at 721.979 kb on - strandat 721.997 kb on - strandat 722.357 kb on - strand, within BBR_RS13135at 722.717 kb on - strandat 722.760 kb on + strandat 722.884 kb on + strandat 722.886 kb on + strandat 722.965 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse17; day4
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720,228 + -0.5
720,321 - +0.1
720,507 + BBR_RS13125 0.19 -0.8
720,507 + BBR_RS13125 0.19 +2.4
721,197 + -1.5
721,202 + +1.8
721,616 + BBR_RS13130 0.50 +2.0
721,790 + BBR_RS13130 0.72 +1.4
721,979 - -1.4
721,997 - -0.0
722,357 - BBR_RS13135 0.45 -0.1
722,717 - +1.4
722,760 + -0.5
722,884 + -1.8
722,886 + -1.2
722,965 + -3.1

Or see this region's nucleotide sequence