Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06185

Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_06183 and H281DRAFT_06184 are separated by 84 nucleotidesH281DRAFT_06184 and H281DRAFT_06185 are separated by 103 nucleotidesH281DRAFT_06185 and H281DRAFT_06186 are separated by 48 nucleotides H281DRAFT_06183: H281DRAFT_06183 - Protein of unknown function (DUF2778), at 73,867 to 74,262 _06183 H281DRAFT_06184: H281DRAFT_06184 - hypothetical protein, at 74,347 to 74,625 _06184 H281DRAFT_06185: H281DRAFT_06185 - transposase, at 74,729 to 76,192 _06185 H281DRAFT_06186: H281DRAFT_06186 - Superfamily I DNA and RNA helicases, at 76,241 to 77,722 _06186 Position (kb) 74 75 76 77Strain fitness (log2 ratio) -2 -1 0 1 2at 73.742 kb on + strandat 73.743 kb on - strandat 73.764 kb on + strandat 73.782 kb on - strandat 73.796 kb on + strandat 73.796 kb on + strandat 73.834 kb on - strandat 73.839 kb on - strandat 73.867 kb on - strandat 73.919 kb on + strand, within H281DRAFT_06183at 73.920 kb on - strand, within H281DRAFT_06183at 73.920 kb on - strand, within H281DRAFT_06183at 74.027 kb on - strand, within H281DRAFT_06183at 74.029 kb on + strand, within H281DRAFT_06183at 74.029 kb on + strand, within H281DRAFT_06183at 74.029 kb on + strand, within H281DRAFT_06183at 74.029 kb on + strand, within H281DRAFT_06183at 74.029 kb on + strand, within H281DRAFT_06183at 74.029 kb on + strand, within H281DRAFT_06183at 74.030 kb on - strand, within H281DRAFT_06183at 74.030 kb on - strand, within H281DRAFT_06183at 74.030 kb on - strand, within H281DRAFT_06183at 74.030 kb on - strand, within H281DRAFT_06183at 74.030 kb on - strand, within H281DRAFT_06183at 74.089 kb on - strand, within H281DRAFT_06183at 74.089 kb on - strand, within H281DRAFT_06183at 74.089 kb on - strand, within H281DRAFT_06183at 74.089 kb on - strand, within H281DRAFT_06183at 74.089 kb on - strand, within H281DRAFT_06183at 74.276 kb on + strandat 74.324 kb on + strandat 74.396 kb on + strand, within H281DRAFT_06184at 74.397 kb on - strand, within H281DRAFT_06184at 74.397 kb on - strand, within H281DRAFT_06184at 74.482 kb on - strand, within H281DRAFT_06184at 74.482 kb on - strand, within H281DRAFT_06184at 74.520 kb on - strand, within H281DRAFT_06184at 74.520 kb on - strand, within H281DRAFT_06184at 74.637 kb on + strandat 74.725 kb on - strandat 74.730 kb on + strandat 74.731 kb on - strandat 74.896 kb on + strand, within H281DRAFT_06185at 74.922 kb on + strand, within H281DRAFT_06185at 74.926 kb on + strand, within H281DRAFT_06185at 75.114 kb on + strand, within H281DRAFT_06185at 75.114 kb on + strand, within H281DRAFT_06185at 75.607 kb on + strand, within H281DRAFT_06185at 75.638 kb on - strand, within H281DRAFT_06185at 75.658 kb on - strand, within H281DRAFT_06185at 75.673 kb on + strand, within H281DRAFT_06185at 75.674 kb on - strand, within H281DRAFT_06185at 75.677 kb on + strand, within H281DRAFT_06185at 75.677 kb on + strand, within H281DRAFT_06185at 75.677 kb on + strand, within H281DRAFT_06185at 75.677 kb on + strand, within H281DRAFT_06185at 75.678 kb on - strand, within H281DRAFT_06185at 75.756 kb on + strand, within H281DRAFT_06185at 75.756 kb on + strand, within H281DRAFT_06185at 75.756 kb on + strand, within H281DRAFT_06185at 75.757 kb on - strand, within H281DRAFT_06185at 75.879 kb on + strand, within H281DRAFT_06185at 75.880 kb on - strand, within H281DRAFT_06185at 75.880 kb on - strand, within H281DRAFT_06185at 75.880 kb on - strand, within H281DRAFT_06185at 75.881 kb on + strand, within H281DRAFT_06185at 75.882 kb on - strand, within H281DRAFT_06185at 75.882 kb on - strand, within H281DRAFT_06185at 75.910 kb on - strand, within H281DRAFT_06185at 76.154 kb on + strandat 76.154 kb on + strandat 76.331 kb on - strandat 76.341 kb on + strandat 76.341 kb on + strandat 76.342 kb on - strandat 76.342 kb on - strandat 76.372 kb on + strandat 76.372 kb on + strandat 76.456 kb on + strand, within H281DRAFT_06186at 76.456 kb on + strand, within H281DRAFT_06186at 76.457 kb on - strand, within H281DRAFT_06186at 76.470 kb on + strand, within H281DRAFT_06186at 76.470 kb on + strand, within H281DRAFT_06186at 76.721 kb on - strand, within H281DRAFT_06186at 76.721 kb on - strand, within H281DRAFT_06186at 76.721 kb on - strandat 76.721 kb on - strand, within H281DRAFT_06186at 76.809 kb on + strand, within H281DRAFT_06186at 76.809 kb on + strand, within H281DRAFT_06186at 76.832 kb on + strandat 76.832 kb on + strand, within H281DRAFT_06186at 76.832 kb on + strand, within H281DRAFT_06186at 76.832 kb on + strand, within H281DRAFT_06186at 76.832 kb on + strand, within H281DRAFT_06186at 76.833 kb on - strand, within H281DRAFT_06186at 76.833 kb on - strand, within H281DRAFT_06186at 76.989 kb on + strand, within H281DRAFT_06186at 76.989 kb on + strand, within H281DRAFT_06186at 76.990 kb on - strand, within H281DRAFT_06186at 76.990 kb on - strand, within H281DRAFT_06186at 77.016 kb on + strand, within H281DRAFT_06186at 77.016 kb on + strand, within H281DRAFT_06186at 77.016 kb on + strand, within H281DRAFT_06186at 77.017 kb on - strand, within H281DRAFT_06186at 77.142 kb on + strand, within H281DRAFT_06186at 77.142 kb on + strand, within H281DRAFT_06186at 77.142 kb on + strand, within H281DRAFT_06186at 77.142 kb on + strand, within H281DRAFT_06186at 77.143 kb on - strand, within H281DRAFT_06186

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
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73,742 + +0.1
73,743 - +0.5
73,764 + -0.3
73,782 - +1.2
73,796 + +0.7
73,796 + -0.4
73,834 - -0.2
73,839 - -0.7
73,867 - +1.1
73,919 + H281DRAFT_06183 0.13 -0.3
73,920 - H281DRAFT_06183 0.13 -0.9
73,920 - H281DRAFT_06183 0.13 -0.1
74,027 - H281DRAFT_06183 0.40 +0.9
74,029 + H281DRAFT_06183 0.41 +2.0
74,029 + H281DRAFT_06183 0.41 +0.3
74,029 + H281DRAFT_06183 0.41 -0.0
74,029 + H281DRAFT_06183 0.41 -0.2
74,029 + H281DRAFT_06183 0.41 +0.7
74,029 + H281DRAFT_06183 0.41 -0.5
74,030 - H281DRAFT_06183 0.41 +0.8
74,030 - H281DRAFT_06183 0.41 -1.2
74,030 - H281DRAFT_06183 0.41 +0.2
74,030 - H281DRAFT_06183 0.41 +0.7
74,030 - H281DRAFT_06183 0.41 +0.5
74,089 - H281DRAFT_06183 0.56 -0.2
74,089 - H281DRAFT_06183 0.56 -0.2
74,089 - H281DRAFT_06183 0.56 +0.1
74,089 - H281DRAFT_06183 0.56 -0.3
74,089 - H281DRAFT_06183 0.56 -0.5
74,276 + +0.2
74,324 + -1.9
74,396 + H281DRAFT_06184 0.18 +1.7
74,397 - H281DRAFT_06184 0.18 +0.9
74,397 - H281DRAFT_06184 0.18 +2.0
74,482 - H281DRAFT_06184 0.48 +0.6
74,482 - H281DRAFT_06184 0.48 +2.1
74,520 - H281DRAFT_06184 0.62 +0.7
74,520 - H281DRAFT_06184 0.62 +0.2
74,637 + -0.1
74,725 - +0.5
74,730 + -1.8
74,731 - -0.7
74,896 + H281DRAFT_06185 0.11 +0.8
74,922 + H281DRAFT_06185 0.13 +0.8
74,926 + H281DRAFT_06185 0.13 +0.4
75,114 + H281DRAFT_06185 0.26 +2.3
75,114 + H281DRAFT_06185 0.26 +0.6
75,607 + H281DRAFT_06185 0.60 -1.5
75,638 - H281DRAFT_06185 0.62 -1.9
75,658 - H281DRAFT_06185 0.63 +2.6
75,673 + H281DRAFT_06185 0.64 -0.6
75,674 - H281DRAFT_06185 0.65 +0.6
75,677 + H281DRAFT_06185 0.65 +0.8
75,677 + H281DRAFT_06185 0.65 +0.3
75,677 + H281DRAFT_06185 0.65 -0.9
75,677 + H281DRAFT_06185 0.65 -0.0
75,678 - H281DRAFT_06185 0.65 -0.6
75,756 + H281DRAFT_06185 0.70 -2.1
75,756 + H281DRAFT_06185 0.70 -0.5
75,756 + H281DRAFT_06185 0.70 -0.3
75,757 - H281DRAFT_06185 0.70 +0.5
75,879 + H281DRAFT_06185 0.79 +0.6
75,880 - H281DRAFT_06185 0.79 +0.4
75,880 - H281DRAFT_06185 0.79 +0.5
75,880 - H281DRAFT_06185 0.79 -0.7
75,881 + H281DRAFT_06185 0.79 +0.7
75,882 - H281DRAFT_06185 0.79 -1.0
75,882 - H281DRAFT_06185 0.79 -0.0
75,910 - H281DRAFT_06185 0.81 +0.6
76,154 + +0.5
76,154 + +2.2
76,331 - +0.1
76,341 + -0.2
76,341 + +0.5
76,342 - +0.7
76,342 - +0.4
76,372 + -0.4
76,372 + +0.8
76,456 + H281DRAFT_06186 0.15 -2.1
76,456 + H281DRAFT_06186 0.15 +0.6
76,457 - H281DRAFT_06186 0.15 +0.0
76,470 + H281DRAFT_06186 0.15 +0.2
76,470 + H281DRAFT_06186 0.15 -0.4
76,721 - H281DRAFT_06186 0.32 +0.3
76,721 - H281DRAFT_06186 0.32 +0.5
76,721 - +1.5
76,721 - H281DRAFT_06186 0.32 +0.2
76,809 + H281DRAFT_06186 0.38 -0.8
76,809 + H281DRAFT_06186 0.38 -1.1
76,832 + +1.8
76,832 + H281DRAFT_06186 0.40 +0.6
76,832 + H281DRAFT_06186 0.40 +0.1
76,832 + H281DRAFT_06186 0.40 +0.5
76,832 + H281DRAFT_06186 0.40 +0.8
76,833 - H281DRAFT_06186 0.40 +0.2
76,833 - H281DRAFT_06186 0.40 +0.4
76,989 + H281DRAFT_06186 0.50 +0.1
76,989 + H281DRAFT_06186 0.50 +0.3
76,990 - H281DRAFT_06186 0.51 +0.8
76,990 - H281DRAFT_06186 0.51 +0.9
77,016 + H281DRAFT_06186 0.52 -1.9
77,016 + H281DRAFT_06186 0.52 +0.6
77,016 + H281DRAFT_06186 0.52 +0.0
77,017 - H281DRAFT_06186 0.52 -0.1
77,142 + H281DRAFT_06186 0.61 +0.7
77,142 + H281DRAFT_06186 0.61 +1.1
77,142 + H281DRAFT_06186 0.61 -1.1
77,142 + H281DRAFT_06186 0.61 +0.0
77,143 - H281DRAFT_06186 0.61 +0.1

Or see this region's nucleotide sequence