Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06118

Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_06117 and H281DRAFT_06118 are separated by 72 nucleotidesH281DRAFT_06118 and H281DRAFT_06119 are separated by 81 nucleotidesH281DRAFT_06119 and H281DRAFT_06120 are separated by 24 nucleotides H281DRAFT_06117: H281DRAFT_06117 - citrate synthase, at 137,310 to 138,611 _06117 H281DRAFT_06118: H281DRAFT_06118 - antitoxin CptB, at 138,684 to 138,956 _06118 H281DRAFT_06119: H281DRAFT_06119 - succinate dehydrogenase subunit B, at 139,038 to 139,742 _06119 H281DRAFT_06120: H281DRAFT_06120 - hypothetical protein, at 139,767 to 139,847 _06120 Position (kb) 138 139Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 138.963 kb on - strandat 138.963 kb on - strandat 139.718 kb on - strandat 139.731 kb on - strandat 139.768 kb on + strandat 139.832 kb on - strand, within H281DRAFT_06120

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
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138,963 - +0.4
138,963 - +2.0
139,718 - -3.5
139,731 - -1.9
139,768 + -0.1
139,832 - H281DRAFT_06120 0.80 -2.0

Or see this region's nucleotide sequence