Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_06116 and H281DRAFT_06117 are separated by 152 nucleotides H281DRAFT_06117 and H281DRAFT_06118 are separated by 72 nucleotides H281DRAFT_06118 and H281DRAFT_06119 are separated by 81 nucleotides
H281DRAFT_06116: H281DRAFT_06116 - transcriptional regulator, AraC family, at 135,994 to 137,157
_06116
H281DRAFT_06117: H281DRAFT_06117 - citrate synthase, at 137,310 to 138,611
_06117
H281DRAFT_06118: H281DRAFT_06118 - antitoxin CptB, at 138,684 to 138,956
_06118
H281DRAFT_06119: H281DRAFT_06119 - succinate dehydrogenase subunit B, at 139,038 to 139,742
_06119
Position (kb) 137
138
139 Strain fitness (log2 ratio) -2
-1
0
1
2 at 136.579 kb on - strand, within H281DRAFT_06116 at 136.844 kb on - strand, within H281DRAFT_06116 at 136.844 kb on - strand, within H281DRAFT_06116 at 136.879 kb on + strand, within H281DRAFT_06116 at 136.880 kb on - strand, within H281DRAFT_06116 at 136.884 kb on - strand, within H281DRAFT_06116 at 136.884 kb on - strand, within H281DRAFT_06116 at 136.947 kb on - strand, within H281DRAFT_06116 at 137.142 kb on + strand at 137.142 kb on + strand at 137.192 kb on - strand at 137.192 kb on - strand at 137.192 kb on - strand at 137.272 kb on - strand at 137.311 kb on + strand at 138.963 kb on - strand at 138.963 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 136,579 - H281DRAFT_06116 0.50 +0.5 136,844 - H281DRAFT_06116 0.73 +0.9 136,844 - H281DRAFT_06116 0.73 +1.8 136,879 + H281DRAFT_06116 0.76 -0.1 136,880 - H281DRAFT_06116 0.76 -0.1 136,884 - H281DRAFT_06116 0.76 +1.4 136,884 - H281DRAFT_06116 0.76 +0.7 136,947 - H281DRAFT_06116 0.82 +0.3 137,142 + +0.3 137,142 + -1.4 137,192 - +1.3 137,192 - -0.4 137,192 - -0.2 137,272 - -2.4 137,311 + -0.3 138,963 - +0.4 138,963 - +2.0
Or see this region's nucleotide sequence