Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_06100 and H281DRAFT_06101 are separated by 21 nucleotides H281DRAFT_06101 and H281DRAFT_06102 are separated by 58 nucleotides H281DRAFT_06102 and H281DRAFT_06103 are separated by 1 nucleotides
H281DRAFT_06100: H281DRAFT_06100 - peptide/nickel transport system substrate-binding protein, at 119,616 to 121,223
_06100
H281DRAFT_06101: H281DRAFT_06101 - peptide/nickel transport system permease protein, at 121,245 to 122,315
_06101
H281DRAFT_06102: H281DRAFT_06102 - peptide/nickel transport system permease protein, at 122,374 to 123,288
_06102
H281DRAFT_06103: H281DRAFT_06103 - peptide/nickel transport system ATP-binding protein, at 123,290 to 124,180
_06103
Position (kb) 121
122
123 Strain fitness (log2 ratio) -2
-1
0
1
2 at 120.380 kb on - strand, within H281DRAFT_06100 at 120.603 kb on + strand, within H281DRAFT_06100 at 120.904 kb on - strand, within H281DRAFT_06100 at 121.141 kb on + strand at 121.201 kb on - strand at 121.513 kb on - strand, within H281DRAFT_06101 at 121.777 kb on - strand, within H281DRAFT_06101 at 121.777 kb on - strand, within H281DRAFT_06101 at 121.862 kb on - strand, within H281DRAFT_06101 at 121.937 kb on - strand, within H281DRAFT_06101 at 121.948 kb on - strand, within H281DRAFT_06101 at 122.011 kb on - strand, within H281DRAFT_06101 at 122.118 kb on - strand, within H281DRAFT_06101 at 122.118 kb on - strand, within H281DRAFT_06101 at 122.181 kb on + strand, within H281DRAFT_06101 at 122.390 kb on + strand at 122.418 kb on + strand at 122.702 kb on + strand, within H281DRAFT_06102 at 122.741 kb on + strand, within H281DRAFT_06102
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 120,380 - H281DRAFT_06100 0.48 +0.1 120,603 + H281DRAFT_06100 0.61 +0.3 120,904 - H281DRAFT_06100 0.80 +0.2 121,141 + +2.4 121,201 - -0.6 121,513 - H281DRAFT_06101 0.25 -0.4 121,777 - H281DRAFT_06101 0.50 +0.3 121,777 - H281DRAFT_06101 0.50 +0.5 121,862 - H281DRAFT_06101 0.58 -0.3 121,937 - H281DRAFT_06101 0.65 +0.7 121,948 - H281DRAFT_06101 0.66 +0.3 122,011 - H281DRAFT_06101 0.72 +0.8 122,118 - H281DRAFT_06101 0.82 +1.2 122,118 - H281DRAFT_06101 0.82 +0.1 122,181 + H281DRAFT_06101 0.87 -0.6 122,390 + -1.8 122,418 + +1.0 122,702 + H281DRAFT_06102 0.36 +1.0 122,741 + H281DRAFT_06102 0.40 +0.8
Or see this region's nucleotide sequence