Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05739 and H281DRAFT_05740 are separated by 19 nucleotides H281DRAFT_05740 and H281DRAFT_05741 are separated by 84 nucleotides H281DRAFT_05741 and H281DRAFT_05742 are separated by 87 nucleotides
H281DRAFT_05739: H281DRAFT_05739 - chemotaxis protein MotA, at 11,345 to 12,205
_05739
H281DRAFT_05740: H281DRAFT_05740 - chemotaxis protein MotB, at 12,225 to 13,232
_05740
H281DRAFT_05741: H281DRAFT_05741 - two-component system, chemotaxis family, response regulator CheY, at 13,317 to 13,694
_05741
H281DRAFT_05742: H281DRAFT_05742 - CheA signal transduction histidine kinase, at 13,782 to 16,058
_05742
Position (kb) 12
13
14 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 11.244 kb on + strand at 11.296 kb on + strand at 11.297 kb on - strand at 11.469 kb on + strand, within H281DRAFT_05739 at 11.552 kb on + strand, within H281DRAFT_05739 at 11.553 kb on - strand, within H281DRAFT_05739 at 11.567 kb on + strand, within H281DRAFT_05739 at 11.567 kb on + strand, within H281DRAFT_05739 at 11.568 kb on - strand, within H281DRAFT_05739 at 11.569 kb on + strand, within H281DRAFT_05739 at 11.591 kb on + strand, within H281DRAFT_05739 at 11.591 kb on + strand, within H281DRAFT_05739 at 11.592 kb on - strand, within H281DRAFT_05739 at 11.592 kb on - strand, within H281DRAFT_05739 at 11.968 kb on + strand, within H281DRAFT_05739 at 11.968 kb on + strand, within H281DRAFT_05739 at 11.969 kb on - strand, within H281DRAFT_05739 at 11.969 kb on - strand, within H281DRAFT_05739 at 12.203 kb on + strand at 12.312 kb on + strand at 12.312 kb on + strand at 12.405 kb on + strand, within H281DRAFT_05740 at 12.406 kb on - strand, within H281DRAFT_05740 at 12.795 kb on + strand, within H281DRAFT_05740 at 12.795 kb on + strand, within H281DRAFT_05740 at 12.795 kb on + strand, within H281DRAFT_05740 at 12.796 kb on - strand, within H281DRAFT_05740 at 12.796 kb on - strand, within H281DRAFT_05740 at 12.859 kb on + strand, within H281DRAFT_05740 at 12.860 kb on - strand, within H281DRAFT_05740 at 12.860 kb on - strand, within H281DRAFT_05740 at 12.886 kb on - strand, within H281DRAFT_05740 at 12.906 kb on + strand, within H281DRAFT_05740 at 12.907 kb on - strand, within H281DRAFT_05740 at 12.907 kb on - strand, within H281DRAFT_05740 at 12.988 kb on + strand, within H281DRAFT_05740 at 12.988 kb on + strand, within H281DRAFT_05740 at 12.989 kb on - strand, within H281DRAFT_05740 at 12.997 kb on + strand, within H281DRAFT_05740 at 12.998 kb on - strand, within H281DRAFT_05740 at 13.293 kb on + strand at 13.293 kb on + strand at 13.293 kb on + strand at 13.294 kb on - strand at 13.294 kb on - strand at 13.294 kb on - strand at 13.298 kb on + strand at 13.298 kb on + strand at 13.298 kb on + strand at 13.299 kb on - strand at 13.299 kb on - strand at 13.299 kb on - strand at 13.299 kb on - strand at 13.299 kb on - strand at 13.299 kb on - strand at 13.299 kb on - strand at 13.536 kb on + strand, within H281DRAFT_05741 at 13.693 kb on - strand at 13.693 kb on - strand at 13.693 kb on - strand at 13.705 kb on + strand at 13.705 kb on + strand at 13.705 kb on + strand at 13.706 kb on - strand at 13.714 kb on + strand at 13.716 kb on + strand at 13.716 kb on + strand at 13.717 kb on - strand at 13.806 kb on + strand at 13.806 kb on + strand at 13.806 kb on + strand at 13.807 kb on - strand at 13.807 kb on - strand at 13.958 kb on + strand at 13.958 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 11,244 + +0.7 11,296 + -1.0 11,297 - -0.1 11,469 + H281DRAFT_05739 0.14 -1.7 11,552 + H281DRAFT_05739 0.24 +0.5 11,553 - H281DRAFT_05739 0.24 -0.2 11,567 + H281DRAFT_05739 0.26 +0.1 11,567 + H281DRAFT_05739 0.26 -0.7 11,568 - H281DRAFT_05739 0.26 +1.1 11,569 + H281DRAFT_05739 0.26 -0.7 11,591 + H281DRAFT_05739 0.29 -0.1 11,591 + H281DRAFT_05739 0.29 +1.2 11,592 - H281DRAFT_05739 0.29 -1.7 11,592 - H281DRAFT_05739 0.29 +1.0 11,968 + H281DRAFT_05739 0.72 +1.1 11,968 + H281DRAFT_05739 0.72 +0.3 11,969 - H281DRAFT_05739 0.72 +0.4 11,969 - H281DRAFT_05739 0.72 +1.1 12,203 + -0.7 12,312 + +0.9 12,312 + -2.5 12,405 + H281DRAFT_05740 0.18 +0.8 12,406 - H281DRAFT_05740 0.18 +2.5 12,795 + H281DRAFT_05740 0.57 +0.2 12,795 + H281DRAFT_05740 0.57 -3.1 12,795 + H281DRAFT_05740 0.57 -1.8 12,796 - H281DRAFT_05740 0.57 +1.3 12,796 - H281DRAFT_05740 0.57 -0.7 12,859 + H281DRAFT_05740 0.63 +2.0 12,860 - H281DRAFT_05740 0.63 -0.5 12,860 - H281DRAFT_05740 0.63 -2.4 12,886 - H281DRAFT_05740 0.66 -0.7 12,906 + H281DRAFT_05740 0.68 -0.7 12,907 - H281DRAFT_05740 0.68 -1.2 12,907 - H281DRAFT_05740 0.68 +1.1 12,988 + H281DRAFT_05740 0.76 +0.6 12,988 + H281DRAFT_05740 0.76 -0.1 12,989 - H281DRAFT_05740 0.76 +0.8 12,997 + H281DRAFT_05740 0.77 +0.8 12,998 - H281DRAFT_05740 0.77 -0.5 13,293 + -0.4 13,293 + +0.4 13,293 + +0.8 13,294 - +1.1 13,294 - -0.8 13,294 - +1.2 13,298 + -0.3 13,298 + -0.5 13,298 + +1.9 13,299 - +1.3 13,299 - -1.5 13,299 - -0.8 13,299 - +0.7 13,299 - -0.7 13,299 - +0.9 13,299 - +1.2 13,536 + H281DRAFT_05741 0.58 +0.2 13,693 - -0.1 13,693 - -0.0 13,693 - +0.3 13,705 + +0.3 13,705 + -1.2 13,705 + +0.4 13,706 - -2.3 13,714 + +1.2 13,716 + -0.3 13,716 + +0.5 13,717 - -2.1 13,806 + +0.2 13,806 + +1.8 13,806 + -0.2 13,807 - -1.8 13,807 - +1.3 13,958 + -0.7 13,958 + -0.3
Or see this region's nucleotide sequence