Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05377 and H281DRAFT_05378 are separated by 44 nucleotides H281DRAFT_05378 and H281DRAFT_05379 are separated by 781 nucleotides
H281DRAFT_05377: H281DRAFT_05377 - Inosine-uridine nucleoside N-ribohydrolase, at 134,724 to 135,860
_05377
H281DRAFT_05378: H281DRAFT_05378 - transcriptional regulator, LysR family, at 135,905 to 136,861
_05378
H281DRAFT_05379: H281DRAFT_05379 - uncharacterized zinc-type alcohol dehydrogenase-like protein, at 137,643 to 138,695
_05379
Position (kb) 135
136
137 Strain fitness (log2 ratio) -2
-1
0
1
2 at 135.025 kb on - strand at 135.039 kb on + strand, within H281DRAFT_05377 at 135.339 kb on + strand, within H281DRAFT_05377 at 135.339 kb on + strand, within H281DRAFT_05377 at 135.339 kb on + strand, within H281DRAFT_05377 at 135.339 kb on + strand, within H281DRAFT_05377 at 135.339 kb on + strand, within H281DRAFT_05377 at 135.340 kb on - strand, within H281DRAFT_05377 at 135.371 kb on + strand, within H281DRAFT_05377 at 135.492 kb on - strand, within H281DRAFT_05377 at 135.502 kb on - strand, within H281DRAFT_05377 at 135.543 kb on - strand, within H281DRAFT_05377 at 135.571 kb on - strand, within H281DRAFT_05377 at 135.820 kb on - strand at 135.863 kb on + strand at 135.863 kb on + strand at 135.864 kb on - strand at 135.878 kb on - strand at 136.085 kb on + strand, within H281DRAFT_05378 at 136.085 kb on + strand, within H281DRAFT_05378 at 136.086 kb on - strand, within H281DRAFT_05378 at 136.176 kb on + strand, within H281DRAFT_05378 at 136.177 kb on - strand, within H281DRAFT_05378 at 136.271 kb on - strand, within H281DRAFT_05378 at 136.324 kb on + strand, within H281DRAFT_05378 at 136.468 kb on + strand, within H281DRAFT_05378 at 136.468 kb on + strand, within H281DRAFT_05378 at 136.468 kb on + strand, within H281DRAFT_05378 at 136.507 kb on - strand, within H281DRAFT_05378 at 136.514 kb on - strand, within H281DRAFT_05378 at 136.514 kb on - strand, within H281DRAFT_05378 at 136.663 kb on - strand, within H281DRAFT_05378 at 136.665 kb on + strand, within H281DRAFT_05378 at 136.857 kb on - strand at 136.927 kb on + strand at 136.927 kb on + strand at 136.983 kb on + strand at 137.066 kb on + strand at 137.073 kb on + strand at 137.073 kb on + strand at 137.073 kb on + strand at 137.073 kb on + strand at 137.074 kb on - strand at 137.158 kb on + strand at 137.159 kb on - strand at 137.294 kb on + strand at 137.418 kb on + strand at 137.453 kb on - strand at 137.453 kb on - strand at 137.509 kb on + strand at 137.615 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 135,025 - -0.0 135,039 + H281DRAFT_05377 0.28 -2.2 135,339 + H281DRAFT_05377 0.54 -1.2 135,339 + H281DRAFT_05377 0.54 -0.4 135,339 + H281DRAFT_05377 0.54 -0.4 135,339 + H281DRAFT_05377 0.54 -0.9 135,339 + H281DRAFT_05377 0.54 -0.3 135,340 - H281DRAFT_05377 0.54 +1.5 135,371 + H281DRAFT_05377 0.57 -1.6 135,492 - H281DRAFT_05377 0.68 +0.9 135,502 - H281DRAFT_05377 0.68 +0.8 135,543 - H281DRAFT_05377 0.72 -0.3 135,571 - H281DRAFT_05377 0.74 -0.1 135,820 - -0.4 135,863 + -0.1 135,863 + -0.9 135,864 - +0.5 135,878 - -0.4 136,085 + H281DRAFT_05378 0.19 +2.2 136,085 + H281DRAFT_05378 0.19 -0.1 136,086 - H281DRAFT_05378 0.19 +1.1 136,176 + H281DRAFT_05378 0.28 +1.3 136,177 - H281DRAFT_05378 0.28 -1.8 136,271 - H281DRAFT_05378 0.38 +1.0 136,324 + H281DRAFT_05378 0.44 -0.5 136,468 + H281DRAFT_05378 0.59 +0.1 136,468 + H281DRAFT_05378 0.59 -0.5 136,468 + H281DRAFT_05378 0.59 -0.1 136,507 - H281DRAFT_05378 0.63 +0.1 136,514 - H281DRAFT_05378 0.64 +0.2 136,514 - H281DRAFT_05378 0.64 +0.8 136,663 - H281DRAFT_05378 0.79 +0.3 136,665 + H281DRAFT_05378 0.79 +0.3 136,857 - +0.1 136,927 + -2.2 136,927 + +0.6 136,983 + +0.9 137,066 + +0.8 137,073 + -0.0 137,073 + -0.6 137,073 + -0.2 137,073 + -0.7 137,074 - -1.8 137,158 + +0.6 137,159 - -0.3 137,294 + -1.1 137,418 + +1.6 137,453 - +0.5 137,453 - -0.8 137,509 + +0.7 137,615 - -0.5
Or see this region's nucleotide sequence