Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05304 and H281DRAFT_05305 are separated by 340 nucleotides H281DRAFT_05305 and H281DRAFT_05306 are separated by 153 nucleotides
H281DRAFT_05304: H281DRAFT_05304 - hypothetical protein, at 49,593 to 50,384
_05304
H281DRAFT_05305: H281DRAFT_05305 - Signal transduction histidine kinase, at 50,725 to 52,662
_05305
H281DRAFT_05306: H281DRAFT_05306 - two component transcriptional regulator, LuxR family, at 52,816 to 53,577
_05306
Position (kb) 50
51
52
53 Strain fitness (log2 ratio) -2
-1
0
1
2 at 50.245 kb on + strand, within H281DRAFT_05304 at 50.470 kb on + strand at 50.511 kb on + strand at 50.512 kb on - strand at 50.520 kb on + strand at 50.521 kb on - strand at 50.528 kb on - strand at 50.621 kb on - strand at 50.842 kb on + strand at 50.843 kb on - strand at 50.894 kb on - strand at 51.198 kb on + strand, within H281DRAFT_05305 at 51.199 kb on - strand, within H281DRAFT_05305 at 51.199 kb on - strand, within H281DRAFT_05305 at 51.319 kb on + strand, within H281DRAFT_05305 at 51.510 kb on + strand, within H281DRAFT_05305 at 51.677 kb on + strand, within H281DRAFT_05305 at 51.678 kb on - strand, within H281DRAFT_05305 at 51.761 kb on - strand, within H281DRAFT_05305 at 51.761 kb on - strand, within H281DRAFT_05305 at 51.820 kb on + strand, within H281DRAFT_05305 at 51.821 kb on - strand, within H281DRAFT_05305 at 51.821 kb on - strand, within H281DRAFT_05305 at 51.890 kb on - strand, within H281DRAFT_05305 at 52.253 kb on + strand, within H281DRAFT_05305 at 52.360 kb on - strand, within H281DRAFT_05305 at 52.674 kb on - strand at 52.674 kb on - strand at 52.782 kb on - strand at 52.818 kb on - strand at 53.207 kb on + strand, within H281DRAFT_05306 at 53.207 kb on + strand, within H281DRAFT_05306 at 53.208 kb on - strand, within H281DRAFT_05306 at 53.208 kb on - strand, within H281DRAFT_05306 at 53.339 kb on - strand, within H281DRAFT_05306 at 53.410 kb on - strand, within H281DRAFT_05306 at 53.613 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 50,245 + H281DRAFT_05304 0.82 -2.0 50,470 + +1.4 50,511 + -0.8 50,512 - +0.5 50,520 + +0.2 50,521 - +0.4 50,528 - +0.1 50,621 - -0.2 50,842 + +0.8 50,843 - -1.5 50,894 - -0.2 51,198 + H281DRAFT_05305 0.24 +0.5 51,199 - H281DRAFT_05305 0.24 +2.0 51,199 - H281DRAFT_05305 0.24 +1.6 51,319 + H281DRAFT_05305 0.31 -0.9 51,510 + H281DRAFT_05305 0.41 +1.3 51,677 + H281DRAFT_05305 0.49 +0.3 51,678 - H281DRAFT_05305 0.49 +0.9 51,761 - H281DRAFT_05305 0.53 -0.2 51,761 - H281DRAFT_05305 0.53 -0.2 51,820 + H281DRAFT_05305 0.57 +1.1 51,821 - H281DRAFT_05305 0.57 -2.2 51,821 - H281DRAFT_05305 0.57 +1.1 51,890 - H281DRAFT_05305 0.60 +0.5 52,253 + H281DRAFT_05305 0.79 -0.6 52,360 - H281DRAFT_05305 0.84 -0.4 52,674 - -0.7 52,674 - +0.6 52,782 - +0.4 52,818 - +0.3 53,207 + H281DRAFT_05306 0.51 -1.3 53,207 + H281DRAFT_05306 0.51 +0.4 53,208 - H281DRAFT_05306 0.51 -1.0 53,208 - H281DRAFT_05306 0.51 +0.5 53,339 - H281DRAFT_05306 0.69 +0.2 53,410 - H281DRAFT_05306 0.78 -1.0 53,613 + +0.5
Or see this region's nucleotide sequence