Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05245 and H281DRAFT_05246 are separated by 379 nucleotides H281DRAFT_05246 and H281DRAFT_05247 are separated by 23 nucleotides H281DRAFT_05247 and H281DRAFT_05248 are separated by 232 nucleotides H281DRAFT_05248 and H281DRAFT_05249 are separated by 193 nucleotides
H281DRAFT_05245: H281DRAFT_05245 - hypothetical protein, at 213,024 to 213,260
_05245
H281DRAFT_05246: H281DRAFT_05246 - Predicted membrane protein, at 213,640 to 214,134
_05246
H281DRAFT_05247: H281DRAFT_05247 - drug resistance transporter, EmrB/QacA subfamily, at 214,158 to 215,555
_05247
H281DRAFT_05248: H281DRAFT_05248 - hypothetical protein, at 215,788 to 215,940
_05248
H281DRAFT_05249: H281DRAFT_05249 - hypothetical protein, at 216,134 to 216,274
_05249
Position (kb) 214
215
216 Strain fitness (log2 ratio) -1
0
1
2 at 213.291 kb on + strand at 213.291 kb on + strand at 213.292 kb on - strand at 213.292 kb on - strand at 213.624 kb on - strand at 213.624 kb on - strand at 214.028 kb on + strand, within H281DRAFT_05246 at 214.028 kb on + strand, within H281DRAFT_05246 at 214.028 kb on + strand, within H281DRAFT_05246 at 214.029 kb on - strand, within H281DRAFT_05246 at 214.420 kb on + strand, within H281DRAFT_05247 at 214.421 kb on - strand, within H281DRAFT_05247 at 214.826 kb on - strand, within H281DRAFT_05247 at 214.834 kb on + strand, within H281DRAFT_05247 at 214.834 kb on + strand, within H281DRAFT_05247 at 214.835 kb on - strand, within H281DRAFT_05247 at 214.835 kb on - strand, within H281DRAFT_05247 at 215.023 kb on + strand, within H281DRAFT_05247 at 215.023 kb on + strand, within H281DRAFT_05247 at 215.024 kb on - strand, within H281DRAFT_05247 at 215.024 kb on - strand, within H281DRAFT_05247 at 215.080 kb on + strand, within H281DRAFT_05247 at 215.080 kb on + strand, within H281DRAFT_05247 at 215.081 kb on - strand, within H281DRAFT_05247 at 215.081 kb on - strand, within H281DRAFT_05247 at 215.081 kb on - strand, within H281DRAFT_05247 at 215.147 kb on - strand, within H281DRAFT_05247 at 215.399 kb on - strand, within H281DRAFT_05247 at 215.596 kb on + strand at 215.597 kb on - strand at 215.597 kb on - strand at 215.607 kb on + strand at 215.625 kb on + strand at 215.732 kb on - strand at 215.742 kb on + strand at 215.820 kb on + strand, within H281DRAFT_05248 at 215.821 kb on - strand, within H281DRAFT_05248 at 215.938 kb on + strand at 216.026 kb on + strand at 216.113 kb on - strand at 216.119 kb on + strand at 216.240 kb on + strand, within H281DRAFT_05249 at 216.240 kb on + strand, within H281DRAFT_05249 at 216.240 kb on + strand, within H281DRAFT_05249 at 216.514 kb on + strand at 216.522 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 213,291 + +0.5 213,291 + -0.1 213,292 - +1.4 213,292 - +1.4 213,624 - +0.9 213,624 - +0.5 214,028 + H281DRAFT_05246 0.78 -0.6 214,028 + H281DRAFT_05246 0.78 +0.2 214,028 + H281DRAFT_05246 0.78 +0.3 214,029 - H281DRAFT_05246 0.79 +0.3 214,420 + H281DRAFT_05247 0.19 +1.1 214,421 - H281DRAFT_05247 0.19 -1.3 214,826 - H281DRAFT_05247 0.48 -0.5 214,834 + H281DRAFT_05247 0.48 -0.6 214,834 + H281DRAFT_05247 0.48 -0.4 214,835 - H281DRAFT_05247 0.48 +1.8 214,835 - H281DRAFT_05247 0.48 +2.4 215,023 + H281DRAFT_05247 0.62 +0.1 215,023 + H281DRAFT_05247 0.62 -1.7 215,024 - H281DRAFT_05247 0.62 +0.0 215,024 - H281DRAFT_05247 0.62 -0.4 215,080 + H281DRAFT_05247 0.66 +0.7 215,080 + H281DRAFT_05247 0.66 +0.3 215,081 - H281DRAFT_05247 0.66 -1.3 215,081 - H281DRAFT_05247 0.66 +0.6 215,081 - H281DRAFT_05247 0.66 -0.1 215,147 - H281DRAFT_05247 0.71 +1.1 215,399 - H281DRAFT_05247 0.89 +0.5 215,596 + -0.0 215,597 - -0.5 215,597 - +0.5 215,607 + +0.2 215,625 + +0.4 215,732 - +0.3 215,742 + -0.1 215,820 + H281DRAFT_05248 0.21 -0.8 215,821 - H281DRAFT_05248 0.22 -0.1 215,938 + -0.5 216,026 + +0.5 216,113 - -0.5 216,119 + +1.1 216,240 + H281DRAFT_05249 0.75 +0.2 216,240 + H281DRAFT_05249 0.75 +1.3 216,240 + H281DRAFT_05249 0.75 -0.1 216,514 + +0.3 216,522 + +0.0
Or see this region's nucleotide sequence