Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04956 and H281DRAFT_04957 are separated by 183 nucleotides H281DRAFT_04957 and H281DRAFT_04958 are separated by 148 nucleotides
H281DRAFT_04956: H281DRAFT_04956 - fumarase, class I, homodimeric, at 141,852 to 143,375
_04956
H281DRAFT_04957: H281DRAFT_04957 - bacterioferritin, at 143,559 to 144,038
_04957
H281DRAFT_04958: H281DRAFT_04958 - glutamate racemase, at 144,187 to 145,071
_04958
Position (kb) 143
144
145 Strain fitness (log2 ratio) -2
-1
0
1
2 at 143.182 kb on - strand, within H281DRAFT_04956 at 143.393 kb on + strand at 143.394 kb on - strand at 143.587 kb on - strand at 143.631 kb on + strand, within H281DRAFT_04957 at 143.652 kb on + strand, within H281DRAFT_04957 at 143.652 kb on + strand, within H281DRAFT_04957 at 143.653 kb on - strand, within H281DRAFT_04957 at 143.654 kb on + strand, within H281DRAFT_04957 at 144.003 kb on + strand at 144.003 kb on + strand at 144.095 kb on - strand at 144.124 kb on + strand at 144.125 kb on - strand at 144.125 kb on - strand at 144.335 kb on - strand, within H281DRAFT_04958 at 144.460 kb on - strand, within H281DRAFT_04958 at 144.631 kb on + strand, within H281DRAFT_04958 at 144.736 kb on + strand, within H281DRAFT_04958 at 144.949 kb on + strand, within H281DRAFT_04958 at 144.950 kb on - strand, within H281DRAFT_04958
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 143,182 - H281DRAFT_04956 0.87 +1.4 143,393 + -0.8 143,394 - -0.6 143,587 - -0.1 143,631 + H281DRAFT_04957 0.15 -1.2 143,652 + H281DRAFT_04957 0.19 +0.8 143,652 + H281DRAFT_04957 0.19 +0.2 143,653 - H281DRAFT_04957 0.20 +0.6 143,654 + H281DRAFT_04957 0.20 -1.5 144,003 + -0.2 144,003 + +0.3 144,095 - +0.2 144,124 + +2.7 144,125 - -0.3 144,125 - +0.5 144,335 - H281DRAFT_04958 0.17 -2.2 144,460 - H281DRAFT_04958 0.31 -1.9 144,631 + H281DRAFT_04958 0.50 -2.3 144,736 + H281DRAFT_04958 0.62 -1.7 144,949 + H281DRAFT_04958 0.86 -1.8 144,950 - H281DRAFT_04958 0.86 -2.2
Or see this region's nucleotide sequence