Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04663

Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04662 and H281DRAFT_04663 are separated by 375 nucleotidesH281DRAFT_04663 and H281DRAFT_04664 are separated by 8 nucleotidesH281DRAFT_04664 and H281DRAFT_04665 are separated by 63 nucleotides H281DRAFT_04662: H281DRAFT_04662 - paraquat-inducible protein A, at 64,192 to 64,971 _04662 H281DRAFT_04663: H281DRAFT_04663 - cytochrome b561, at 65,347 to 65,907 _04663 H281DRAFT_04664: H281DRAFT_04664 - Polyisoprenoid-binding protein YceI, at 65,916 to 66,479 _04664 H281DRAFT_04665: H281DRAFT_04665 - Polyisoprenoid-binding protein YceI, at 66,543 to 67,115 _04665 Position (kb) 65 66Strain fitness (log2 ratio) -1 0 1 2at 64.625 kb on + strand, within H281DRAFT_04662at 64.625 kb on + strand, within H281DRAFT_04662at 64.625 kb on + strand, within H281DRAFT_04662at 64.749 kb on + strand, within H281DRAFT_04662at 64.749 kb on + strand, within H281DRAFT_04662at 64.750 kb on - strandat 64.862 kb on + strand, within H281DRAFT_04662at 64.862 kb on + strand, within H281DRAFT_04662at 64.928 kb on - strandat 64.933 kb on - strandat 64.990 kb on + strandat 64.991 kb on - strandat 64.991 kb on - strandat 64.991 kb on - strandat 64.991 kb on - strandat 64.998 kb on + strandat 65.032 kb on + strandat 65.062 kb on + strandat 65.062 kb on + strandat 65.062 kb on + strandat 65.062 kb on + strandat 65.062 kb on + strandat 65.062 kb on + strandat 65.063 kb on - strandat 65.065 kb on + strandat 65.297 kb on + strandat 65.298 kb on - strandat 65.328 kb on + strandat 65.329 kb on - strandat 65.383 kb on + strandat 65.384 kb on - strandat 65.511 kb on + strand, within H281DRAFT_04663at 65.531 kb on + strand, within H281DRAFT_04663at 65.647 kb on + strand, within H281DRAFT_04663at 65.648 kb on - strand, within H281DRAFT_04663at 65.651 kb on + strand, within H281DRAFT_04663at 65.651 kb on + strand, within H281DRAFT_04663at 65.652 kb on - strand, within H281DRAFT_04663at 65.652 kb on - strand, within H281DRAFT_04663at 65.652 kb on - strand, within H281DRAFT_04663at 65.652 kb on - strand, within H281DRAFT_04663at 65.652 kb on - strand, within H281DRAFT_04663at 65.652 kb on - strand, within H281DRAFT_04663at 65.686 kb on + strand, within H281DRAFT_04663at 65.686 kb on + strand, within H281DRAFT_04663at 65.687 kb on - strand, within H281DRAFT_04663at 65.803 kb on + strand, within H281DRAFT_04663at 65.804 kb on - strand, within H281DRAFT_04663at 65.804 kb on - strand, within H281DRAFT_04663at 65.804 kb on - strand, within H281DRAFT_04663at 65.834 kb on + strand, within H281DRAFT_04663at 65.834 kb on + strand, within H281DRAFT_04663at 65.905 kb on + strandat 65.906 kb on - strandat 65.906 kb on - strandat 65.932 kb on - strandat 65.938 kb on - strandat 65.940 kb on - strandat 66.147 kb on + strand, within H281DRAFT_04664at 66.147 kb on + strand, within H281DRAFT_04664at 66.147 kb on + strand, within H281DRAFT_04664at 66.148 kb on - strand, within H281DRAFT_04664at 66.168 kb on + strand, within H281DRAFT_04664at 66.169 kb on - strand, within H281DRAFT_04664at 66.169 kb on - strand, within H281DRAFT_04664at 66.169 kb on - strand, within H281DRAFT_04664at 66.169 kb on - strand, within H281DRAFT_04664at 66.213 kb on + strand, within H281DRAFT_04664at 66.473 kb on + strandat 66.474 kb on - strandat 66.477 kb on + strandat 66.609 kb on + strand, within H281DRAFT_04665at 66.609 kb on + strand, within H281DRAFT_04665at 66.610 kb on - strand, within H281DRAFT_04665at 66.610 kb on - strand, within H281DRAFT_04665at 66.849 kb on + strand, within H281DRAFT_04665at 66.849 kb on + strand, within H281DRAFT_04665at 66.850 kb on - strand, within H281DRAFT_04665

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
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64,625 + H281DRAFT_04662 0.56 +0.9
64,625 + H281DRAFT_04662 0.56 +0.6
64,625 + H281DRAFT_04662 0.56 +0.1
64,749 + H281DRAFT_04662 0.71 -0.0
64,749 + H281DRAFT_04662 0.71 -0.8
64,750 - -1.4
64,862 + H281DRAFT_04662 0.86 +1.7
64,862 + H281DRAFT_04662 0.86 -0.7
64,928 - +0.5
64,933 - +1.6
64,990 + +0.4
64,991 - -0.3
64,991 - +1.3
64,991 - +0.4
64,991 - +0.6
64,998 + +1.3
65,032 + +0.5
65,062 + +0.5
65,062 + +1.3
65,062 + -0.1
65,062 + +1.0
65,062 + +1.2
65,062 + +0.9
65,063 - +0.5
65,065 + -1.0
65,297 + +0.0
65,298 - -0.5
65,328 + -0.8
65,329 - +0.3
65,383 + +1.2
65,384 - -0.4
65,511 + H281DRAFT_04663 0.29 -0.5
65,531 + H281DRAFT_04663 0.33 +0.9
65,647 + H281DRAFT_04663 0.53 -0.8
65,648 - H281DRAFT_04663 0.54 -0.8
65,651 + H281DRAFT_04663 0.54 +0.4
65,651 + H281DRAFT_04663 0.54 +0.2
65,652 - H281DRAFT_04663 0.54 +0.1
65,652 - H281DRAFT_04663 0.54 +0.2
65,652 - H281DRAFT_04663 0.54 -0.5
65,652 - H281DRAFT_04663 0.54 -0.6
65,652 - H281DRAFT_04663 0.54 +0.9
65,652 - H281DRAFT_04663 0.54 +0.4
65,686 + H281DRAFT_04663 0.60 -0.7
65,686 + H281DRAFT_04663 0.60 -1.3
65,687 - H281DRAFT_04663 0.61 -0.1
65,803 + H281DRAFT_04663 0.81 -0.3
65,804 - H281DRAFT_04663 0.81 +1.3
65,804 - H281DRAFT_04663 0.81 -1.2
65,804 - H281DRAFT_04663 0.81 +0.3
65,834 + H281DRAFT_04663 0.87 +0.9
65,834 + H281DRAFT_04663 0.87 +1.3
65,905 + +0.1
65,906 - -0.2
65,906 - -1.4
65,932 - +0.9
65,938 - +0.1
65,940 - -0.3
66,147 + H281DRAFT_04664 0.41 +0.5
66,147 + H281DRAFT_04664 0.41 -0.2
66,147 + H281DRAFT_04664 0.41 -1.4
66,148 - H281DRAFT_04664 0.41 -0.3
66,168 + H281DRAFT_04664 0.45 -0.9
66,169 - H281DRAFT_04664 0.45 -1.0
66,169 - H281DRAFT_04664 0.45 +0.3
66,169 - H281DRAFT_04664 0.45 -1.0
66,169 - H281DRAFT_04664 0.45 +0.3
66,213 + H281DRAFT_04664 0.53 +0.4
66,473 + +0.2
66,474 - +0.4
66,477 + +2.1
66,609 + H281DRAFT_04665 0.12 +0.2
66,609 + H281DRAFT_04665 0.12 -0.1
66,610 - H281DRAFT_04665 0.12 -0.4
66,610 - H281DRAFT_04665 0.12 -0.7
66,849 + H281DRAFT_04665 0.53 -0.0
66,849 + H281DRAFT_04665 0.53 +0.7
66,850 - H281DRAFT_04665 0.54 +1.3

Or see this region's nucleotide sequence