Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03554 and H281DRAFT_03555 are separated by 87 nucleotides H281DRAFT_03555 and H281DRAFT_03556 are separated by 228 nucleotides H281DRAFT_03556 and H281DRAFT_03557 are separated by 359 nucleotides
H281DRAFT_03554: H281DRAFT_03554 - membrane protein DedA, SNARE-associated domain, at 58,450 to 59,442
_03554
H281DRAFT_03555: H281DRAFT_03555 - thioredoxin reductase (NADPH), at 59,530 to 61,245
_03555
H281DRAFT_03556: H281DRAFT_03556 - hypothetical protein, at 61,474 to 61,749
_03556
H281DRAFT_03557: H281DRAFT_03557 - hypothetical protein, at 62,109 to 63,332
_03557
Position (kb) 59
60
61
62 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 58.657 kb on + strand, within H281DRAFT_03554 at 58.675 kb on + strand, within H281DRAFT_03554 at 58.818 kb on + strand, within H281DRAFT_03554 at 58.819 kb on - strand, within H281DRAFT_03554 at 58.867 kb on + strand, within H281DRAFT_03554 at 58.868 kb on - strand, within H281DRAFT_03554 at 58.992 kb on + strand, within H281DRAFT_03554 at 59.011 kb on + strand, within H281DRAFT_03554 at 59.011 kb on + strand, within H281DRAFT_03554 at 59.012 kb on - strand, within H281DRAFT_03554 at 59.012 kb on - strand, within H281DRAFT_03554 at 59.020 kb on + strand, within H281DRAFT_03554 at 59.251 kb on + strand, within H281DRAFT_03554 at 59.252 kb on - strand, within H281DRAFT_03554 at 59.761 kb on + strand, within H281DRAFT_03555 at 59.762 kb on - strand, within H281DRAFT_03555 at 59.762 kb on - strand, within H281DRAFT_03555 at 60.265 kb on + strand, within H281DRAFT_03555 at 60.316 kb on + strand, within H281DRAFT_03555 at 60.317 kb on - strand, within H281DRAFT_03555 at 60.403 kb on + strand, within H281DRAFT_03555 at 60.403 kb on + strand, within H281DRAFT_03555 at 60.503 kb on + strand, within H281DRAFT_03555 at 60.602 kb on - strand, within H281DRAFT_03555 at 60.652 kb on + strand, within H281DRAFT_03555 at 60.652 kb on + strand, within H281DRAFT_03555 at 60.655 kb on + strand, within H281DRAFT_03555 at 60.745 kb on + strand, within H281DRAFT_03555 at 61.112 kb on - strand at 61.202 kb on + strand at 61.293 kb on + strand at 61.293 kb on + strand at 61.293 kb on + strand at 61.293 kb on + strand at 61.293 kb on + strand at 61.294 kb on - strand at 61.348 kb on + strand at 61.348 kb on + strand at 61.349 kb on - strand at 61.349 kb on - strand at 61.394 kb on - strand at 61.610 kb on - strand, within H281DRAFT_03556 at 61.610 kb on - strand, within H281DRAFT_03556 at 61.610 kb on - strand, within H281DRAFT_03556 at 61.630 kb on + strand, within H281DRAFT_03556 at 61.630 kb on + strand, within H281DRAFT_03556 at 61.630 kb on + strand, within H281DRAFT_03556 at 61.630 kb on + strand, within H281DRAFT_03556 at 61.648 kb on + strand, within H281DRAFT_03556 at 61.839 kb on + strand at 61.839 kb on + strand at 61.839 kb on + strand at 61.840 kb on - strand at 62.043 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 58,657 + H281DRAFT_03554 0.21 +1.8 58,675 + H281DRAFT_03554 0.23 -0.5 58,818 + H281DRAFT_03554 0.37 -0.1 58,819 - H281DRAFT_03554 0.37 -0.2 58,867 + H281DRAFT_03554 0.42 -0.5 58,868 - H281DRAFT_03554 0.42 -1.0 58,992 + H281DRAFT_03554 0.55 +1.1 59,011 + H281DRAFT_03554 0.56 +0.0 59,011 + H281DRAFT_03554 0.56 +0.8 59,012 - H281DRAFT_03554 0.57 +0.8 59,012 - H281DRAFT_03554 0.57 -2.3 59,020 + H281DRAFT_03554 0.57 +0.8 59,251 + H281DRAFT_03554 0.81 -0.1 59,252 - H281DRAFT_03554 0.81 -0.8 59,761 + H281DRAFT_03555 0.13 -1.1 59,762 - H281DRAFT_03555 0.14 -0.8 59,762 - H281DRAFT_03555 0.14 +0.8 60,265 + H281DRAFT_03555 0.43 -0.5 60,316 + H281DRAFT_03555 0.46 +0.3 60,317 - H281DRAFT_03555 0.46 +0.0 60,403 + H281DRAFT_03555 0.51 +0.3 60,403 + H281DRAFT_03555 0.51 +0.0 60,503 + H281DRAFT_03555 0.57 +0.2 60,602 - H281DRAFT_03555 0.62 +0.8 60,652 + H281DRAFT_03555 0.65 +2.0 60,652 + H281DRAFT_03555 0.65 +0.8 60,655 + H281DRAFT_03555 0.66 +1.0 60,745 + H281DRAFT_03555 0.71 +0.3 61,112 - +0.0 61,202 + -0.4 61,293 + +0.2 61,293 + -0.6 61,293 + +0.1 61,293 + -0.5 61,293 + -1.9 61,294 - +0.5 61,348 + +4.0 61,348 + -0.1 61,349 - -0.1 61,349 - -0.9 61,394 - -1.4 61,610 - H281DRAFT_03556 0.49 +0.9 61,610 - H281DRAFT_03556 0.49 +0.5 61,610 - H281DRAFT_03556 0.49 -0.2 61,630 + H281DRAFT_03556 0.57 +0.1 61,630 + H281DRAFT_03556 0.57 +0.2 61,630 + H281DRAFT_03556 0.57 +0.2 61,630 + H281DRAFT_03556 0.57 -0.5 61,648 + H281DRAFT_03556 0.63 -0.2 61,839 + +0.1 61,839 + -0.3 61,839 + -1.2 61,840 - +0.1 62,043 + +0.2
Or see this region's nucleotide sequence