Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03453 and H281DRAFT_03454 are separated by 2 nucleotides H281DRAFT_03454 and H281DRAFT_03455 are separated by 18 nucleotides H281DRAFT_03455 and H281DRAFT_03456 are separated by 121 nucleotides
H281DRAFT_03453: H281DRAFT_03453 - transcriptional regulator, TetR family, at 535,244 to 536,077
_03453
H281DRAFT_03454: H281DRAFT_03454 - Ribulose-5-phosphate 4-epimerase/Fuculose-1-phosphate aldolase, at 536,080 to 536,868
_03454
H281DRAFT_03455: H281DRAFT_03455 - 2-haloacid dehalogenase, at 536,887 to 537,591
_03455
H281DRAFT_03456: H281DRAFT_03456 - transcriptional regulator, LysR family, at 537,713 to 538,564
_03456
Position (kb) 536
537
538 Strain fitness (log2 ratio) -1
0
1 at 535.993 kb on + strand, within H281DRAFT_03453 at 536.082 kb on - strand at 536.270 kb on + strand, within H281DRAFT_03454 at 536.602 kb on + strand, within H281DRAFT_03454 at 536.875 kb on - strand at 537.421 kb on - strand at 537.556 kb on - strand at 537.743 kb on - strand at 538.446 kb on + strand, within H281DRAFT_03456 at 538.447 kb on - strand, within H281DRAFT_03456
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 535,993 + H281DRAFT_03453 0.90 -0.1 536,082 - -1.2 536,270 + H281DRAFT_03454 0.24 +0.1 536,602 + H281DRAFT_03454 0.66 +1.2 536,875 - +1.5 537,421 - -0.2 537,556 - +1.1 537,743 - -0.3 538,446 + H281DRAFT_03456 0.86 +1.4 538,447 - H281DRAFT_03456 0.86 -1.0
Or see this region's nucleotide sequence