Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02756 and H281DRAFT_02757 are separated by 43 nucleotides H281DRAFT_02757 and H281DRAFT_02758 are separated by 143 nucleotides H281DRAFT_02758 and H281DRAFT_02759 are separated by 162 nucleotides
H281DRAFT_02756: H281DRAFT_02756 - Cupin domain protein, at 344,417 to 344,812
_02756
H281DRAFT_02757: H281DRAFT_02757 - alkylhydroperoxidase AhpD family core domain-containing protein, at 344,856 to 345,335
_02757
H281DRAFT_02758: H281DRAFT_02758 - putative membrane protein, at 345,479 to 346,477
_02758
H281DRAFT_02759: H281DRAFT_02759 - phospholipid-binding protein, PBP family, at 346,640 to 347,212
_02759
Position (kb) 345
346
347 Strain fitness (log2 ratio) -1
0
1
2 at 344.611 kb on - strand, within H281DRAFT_02756 at 344.611 kb on - strand, within H281DRAFT_02756 at 345.314 kb on + strand at 345.316 kb on + strand at 345.354 kb on - strand at 345.639 kb on + strand, within H281DRAFT_02758 at 345.639 kb on + strand, within H281DRAFT_02758 at 345.639 kb on + strand, within H281DRAFT_02758 at 346.028 kb on + strand, within H281DRAFT_02758 at 346.057 kb on - strand, within H281DRAFT_02758 at 346.371 kb on + strand, within H281DRAFT_02758 at 346.372 kb on - strand, within H281DRAFT_02758 at 346.466 kb on - strand at 346.739 kb on + strand, within H281DRAFT_02759 at 346.740 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 344,611 - H281DRAFT_02756 0.49 +0.3 344,611 - H281DRAFT_02756 0.49 -0.0 345,314 + -0.6 345,316 + +0.6 345,354 - +0.1 345,639 + H281DRAFT_02758 0.16 +0.6 345,639 + H281DRAFT_02758 0.16 +0.1 345,639 + H281DRAFT_02758 0.16 -0.3 346,028 + H281DRAFT_02758 0.55 +2.0 346,057 - H281DRAFT_02758 0.58 +1.0 346,371 + H281DRAFT_02758 0.89 +1.1 346,372 - H281DRAFT_02758 0.89 +1.6 346,466 - -0.3 346,739 + H281DRAFT_02759 0.17 -0.5 346,740 - -1.1
Or see this region's nucleotide sequence