Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02396 and H281DRAFT_02397 are separated by 160 nucleotides H281DRAFT_02397 and H281DRAFT_02398 are separated by 236 nucleotides H281DRAFT_02398 and H281DRAFT_02399 overlap by 130 nucleotides H281DRAFT_02399 and H281DRAFT_02400 are separated by 751 nucleotides
H281DRAFT_02396: H281DRAFT_02396 - ATP synthase F1 subcomplex beta subunit, at 560,263 to 561,657
_02396
H281DRAFT_02397: H281DRAFT_02397 - ATP synthase F1 subcomplex epsilon subunit, at 561,818 to 562,243
_02397
H281DRAFT_02398: H281DRAFT_02398 - fatty-acyl-CoA synthase, at 562,480 to 564,210
_02398
H281DRAFT_02399: H281DRAFT_02399 - hypothetical protein, at 564,081 to 564,347
_02399
H281DRAFT_02400: H281DRAFT_02400 - cyclohexadienyl dehydratase (EC 4.2.1.91), at 565,099 to 565,896
_02400
Position (kb) 562
563
564
565 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 561.741 kb on + strand at 562.242 kb on - strand at 562.242 kb on - strand at 562.290 kb on + strand at 562.372 kb on + strand at 562.373 kb on - strand at 562.392 kb on - strand at 562.537 kb on + strand at 562.537 kb on + strand at 562.537 kb on + strand at 562.537 kb on + strand at 562.537 kb on + strand at 562.537 kb on + strand at 562.538 kb on - strand at 562.538 kb on - strand at 562.691 kb on + strand, within H281DRAFT_02398 at 562.691 kb on + strand, within H281DRAFT_02398 at 562.691 kb on + strand, within H281DRAFT_02398 at 562.692 kb on - strand, within H281DRAFT_02398 at 562.692 kb on - strand, within H281DRAFT_02398 at 562.692 kb on - strand, within H281DRAFT_02398 at 562.692 kb on - strand, within H281DRAFT_02398 at 562.853 kb on - strand, within H281DRAFT_02398 at 562.916 kb on - strand, within H281DRAFT_02398 at 562.953 kb on + strand, within H281DRAFT_02398 at 562.953 kb on + strand, within H281DRAFT_02398 at 562.953 kb on + strand, within H281DRAFT_02398 at 562.953 kb on + strand, within H281DRAFT_02398 at 562.954 kb on - strand, within H281DRAFT_02398 at 562.954 kb on - strand, within H281DRAFT_02398 at 563.003 kb on - strand, within H281DRAFT_02398 at 563.003 kb on - strand, within H281DRAFT_02398 at 563.193 kb on + strand, within H281DRAFT_02398 at 563.193 kb on + strand, within H281DRAFT_02398 at 563.193 kb on + strand, within H281DRAFT_02398 at 563.193 kb on + strand, within H281DRAFT_02398 at 563.193 kb on + strand, within H281DRAFT_02398 at 563.218 kb on + strand, within H281DRAFT_02398 at 563.221 kb on - strand, within H281DRAFT_02398 at 563.221 kb on - strand, within H281DRAFT_02398 at 563.277 kb on - strand, within H281DRAFT_02398 at 563.277 kb on - strand, within H281DRAFT_02398 at 563.278 kb on + strand, within H281DRAFT_02398 at 563.279 kb on - strand, within H281DRAFT_02398 at 563.279 kb on - strand, within H281DRAFT_02398 at 563.279 kb on - strand, within H281DRAFT_02398 at 563.279 kb on - strand, within H281DRAFT_02398 at 563.279 kb on - strand, within H281DRAFT_02398 at 563.279 kb on - strand at 563.279 kb on - strand, within H281DRAFT_02398 at 563.430 kb on + strand, within H281DRAFT_02398 at 563.430 kb on + strand, within H281DRAFT_02398 at 563.430 kb on + strand, within H281DRAFT_02398 at 563.430 kb on + strand, within H281DRAFT_02398 at 563.432 kb on + strand, within H281DRAFT_02398 at 563.432 kb on + strand, within H281DRAFT_02398 at 563.432 kb on + strand, within H281DRAFT_02398 at 563.433 kb on - strand, within H281DRAFT_02398 at 563.572 kb on + strand, within H281DRAFT_02398 at 563.681 kb on + strand, within H281DRAFT_02398 at 563.682 kb on - strand, within H281DRAFT_02398 at 563.729 kb on + strand, within H281DRAFT_02398 at 563.729 kb on + strand, within H281DRAFT_02398 at 563.729 kb on + strand, within H281DRAFT_02398 at 563.729 kb on + strand, within H281DRAFT_02398 at 563.730 kb on - strand, within H281DRAFT_02398 at 563.730 kb on - strand, within H281DRAFT_02398 at 563.730 kb on - strand, within H281DRAFT_02398 at 563.730 kb on - strand, within H281DRAFT_02398 at 563.761 kb on + strand, within H281DRAFT_02398 at 563.830 kb on - strand, within H281DRAFT_02398 at 563.849 kb on - strand, within H281DRAFT_02398 at 563.905 kb on + strand, within H281DRAFT_02398 at 563.905 kb on + strand, within H281DRAFT_02398 at 563.905 kb on + strand, within H281DRAFT_02398 at 563.905 kb on + strand, within H281DRAFT_02398 at 563.906 kb on - strand, within H281DRAFT_02398 at 563.906 kb on - strand, within H281DRAFT_02398 at 563.906 kb on - strand, within H281DRAFT_02398 at 564.017 kb on + strand, within H281DRAFT_02398 at 564.017 kb on + strand, within H281DRAFT_02398 at 564.017 kb on + strand, within H281DRAFT_02398 at 564.017 kb on + strand, within H281DRAFT_02398 at 564.018 kb on - strand, within H281DRAFT_02398 at 564.018 kb on - strand, within H281DRAFT_02398 at 564.018 kb on - strand, within H281DRAFT_02398 at 564.018 kb on - strand, within H281DRAFT_02398 at 564.074 kb on + strand at 564.075 kb on - strand at 564.075 kb on - strand at 564.075 kb on - strand at 564.075 kb on - strand at 564.075 kb on - strand at 564.082 kb on + strand at 564.082 kb on + strand at 564.082 kb on + strand at 564.082 kb on + strand at 564.082 kb on + strand at 564.082 kb on + strand at 564.082 kb on + strand at 564.082 kb on + strand at 564.082 kb on + strand at 564.082 kb on + strand at 564.083 kb on - strand at 564.083 kb on - strand at 564.083 kb on - strand at 564.097 kb on + strand at 564.097 kb on + strand at 564.098 kb on - strand at 564.229 kb on + strand, within H281DRAFT_02399 at 564.229 kb on + strand, within H281DRAFT_02399 at 564.229 kb on + strand, within H281DRAFT_02399 at 564.230 kb on - strand, within H281DRAFT_02399 at 564.230 kb on - strand, within H281DRAFT_02399 at 564.340 kb on + strand at 564.407 kb on + strand at 564.448 kb on + strand at 564.449 kb on - strand at 564.449 kb on - strand at 564.449 kb on - strand at 564.508 kb on - strand at 564.545 kb on + strand at 564.611 kb on - strand at 564.707 kb on + strand at 564.709 kb on + strand at 564.709 kb on + strand at 564.710 kb on - strand at 564.711 kb on + strand at 564.712 kb on - strand at 564.712 kb on - strand at 564.736 kb on + strand at 564.737 kb on - strand at 564.737 kb on - strand at 564.737 kb on - strand at 564.776 kb on - strand at 564.803 kb on + strand at 564.803 kb on + strand at 564.804 kb on - strand at 564.843 kb on + strand at 564.844 kb on - strand at 564.908 kb on - strand at 564.933 kb on + strand at 564.974 kb on + strand at 564.975 kb on - strand at 565.005 kb on + strand at 565.005 kb on + strand at 565.032 kb on + strand at 565.033 kb on - strand at 565.033 kb on - strand at 565.034 kb on + strand at 565.034 kb on + strand at 565.034 kb on + strand at 565.034 kb on + strand at 565.034 kb on + strand at 565.034 kb on + strand at 565.035 kb on - strand at 565.035 kb on - strand at 565.035 kb on - strand at 565.035 kb on - strand at 565.035 kb on - strand at 565.035 kb on - strand at 565.035 kb on - strand at 565.036 kb on + strand at 565.037 kb on - strand at 565.037 kb on - strand at 565.095 kb on + strand at 565.095 kb on + strand at 565.130 kb on + strand at 565.131 kb on - strand at 565.131 kb on - strand at 565.172 kb on + strand at 565.172 kb on + strand at 565.172 kb on + strand at 565.173 kb on - strand at 565.173 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 561,741 + -0.7 562,242 - +0.9 562,242 - -0.7 562,290 + +0.1 562,372 + +0.4 562,373 - -1.1 562,392 - -0.2 562,537 + +1.5 562,537 + -0.3 562,537 + -1.2 562,537 + -0.1 562,537 + -0.4 562,537 + -0.3 562,538 - +2.6 562,538 - -0.5 562,691 + H281DRAFT_02398 0.12 -0.7 562,691 + H281DRAFT_02398 0.12 -0.5 562,691 + H281DRAFT_02398 0.12 +0.2 562,692 - H281DRAFT_02398 0.12 -0.3 562,692 - H281DRAFT_02398 0.12 +0.3 562,692 - H281DRAFT_02398 0.12 -0.1 562,692 - H281DRAFT_02398 0.12 -0.9 562,853 - H281DRAFT_02398 0.22 -0.3 562,916 - H281DRAFT_02398 0.25 +1.0 562,953 + H281DRAFT_02398 0.27 -1.4 562,953 + H281DRAFT_02398 0.27 +0.4 562,953 + H281DRAFT_02398 0.27 -0.1 562,953 + H281DRAFT_02398 0.27 +1.0 562,954 - H281DRAFT_02398 0.27 +1.6 562,954 - H281DRAFT_02398 0.27 +1.2 563,003 - H281DRAFT_02398 0.30 +0.2 563,003 - H281DRAFT_02398 0.30 -0.1 563,193 + H281DRAFT_02398 0.41 -1.3 563,193 + H281DRAFT_02398 0.41 -0.5 563,193 + H281DRAFT_02398 0.41 -0.0 563,193 + H281DRAFT_02398 0.41 +0.1 563,193 + H281DRAFT_02398 0.41 -0.6 563,218 + H281DRAFT_02398 0.43 +0.1 563,221 - H281DRAFT_02398 0.43 +1.2 563,221 - H281DRAFT_02398 0.43 -0.0 563,277 - H281DRAFT_02398 0.46 +0.0 563,277 - H281DRAFT_02398 0.46 -1.1 563,278 + H281DRAFT_02398 0.46 +0.2 563,279 - H281DRAFT_02398 0.46 +0.9 563,279 - H281DRAFT_02398 0.46 +0.9 563,279 - H281DRAFT_02398 0.46 -0.2 563,279 - H281DRAFT_02398 0.46 +1.2 563,279 - H281DRAFT_02398 0.46 +0.2 563,279 - +1.5 563,279 - H281DRAFT_02398 0.46 +1.1 563,430 + H281DRAFT_02398 0.55 +0.7 563,430 + H281DRAFT_02398 0.55 +1.2 563,430 + H281DRAFT_02398 0.55 +4.2 563,430 + H281DRAFT_02398 0.55 -0.4 563,432 + H281DRAFT_02398 0.55 -0.5 563,432 + H281DRAFT_02398 0.55 +1.3 563,432 + H281DRAFT_02398 0.55 -0.7 563,433 - H281DRAFT_02398 0.55 +0.8 563,572 + H281DRAFT_02398 0.63 +0.9 563,681 + H281DRAFT_02398 0.69 -0.0 563,682 - H281DRAFT_02398 0.69 +0.0 563,729 + H281DRAFT_02398 0.72 +0.1 563,729 + H281DRAFT_02398 0.72 -0.1 563,729 + H281DRAFT_02398 0.72 +1.0 563,729 + H281DRAFT_02398 0.72 -0.5 563,730 - H281DRAFT_02398 0.72 -0.0 563,730 - H281DRAFT_02398 0.72 -0.3 563,730 - H281DRAFT_02398 0.72 -0.7 563,730 - H281DRAFT_02398 0.72 +1.3 563,761 + H281DRAFT_02398 0.74 +0.4 563,830 - H281DRAFT_02398 0.78 +0.6 563,849 - H281DRAFT_02398 0.79 +0.1 563,905 + H281DRAFT_02398 0.82 +0.9 563,905 + H281DRAFT_02398 0.82 -1.1 563,905 + H281DRAFT_02398 0.82 -0.4 563,905 + H281DRAFT_02398 0.82 +2.0 563,906 - H281DRAFT_02398 0.82 -0.8 563,906 - H281DRAFT_02398 0.82 +0.2 563,906 - H281DRAFT_02398 0.82 -0.1 564,017 + H281DRAFT_02398 0.89 -0.1 564,017 + H281DRAFT_02398 0.89 +0.7 564,017 + H281DRAFT_02398 0.89 +0.1 564,017 + H281DRAFT_02398 0.89 -0.1 564,018 - H281DRAFT_02398 0.89 +2.7 564,018 - H281DRAFT_02398 0.89 +0.3 564,018 - H281DRAFT_02398 0.89 -0.1 564,018 - H281DRAFT_02398 0.89 -0.1 564,074 + -2.0 564,075 - -0.6 564,075 - +2.7 564,075 - -0.8 564,075 - -1.4 564,075 - -2.2 564,082 + -1.1 564,082 + +0.2 564,082 + +1.0 564,082 + -0.4 564,082 + -0.1 564,082 + +2.0 564,082 + +0.1 564,082 + -0.9 564,082 + -0.1 564,082 + +0.9 564,083 - +0.2 564,083 - +0.1 564,083 - +0.0 564,097 + +0.3 564,097 + +0.5 564,098 - +0.6 564,229 + H281DRAFT_02399 0.55 -0.4 564,229 + H281DRAFT_02399 0.55 -0.9 564,229 + H281DRAFT_02399 0.55 -0.3 564,230 - H281DRAFT_02399 0.56 -0.8 564,230 - H281DRAFT_02399 0.56 +1.0 564,340 + +0.5 564,407 + -1.4 564,448 + +1.0 564,449 - -0.4 564,449 - +0.3 564,449 - -0.6 564,508 - -1.1 564,545 + -0.2 564,611 - -1.3 564,707 + +0.2 564,709 + -0.6 564,709 + -0.0 564,710 - -0.7 564,711 + +0.4 564,712 - +1.2 564,712 - -0.0 564,736 + +0.5 564,737 - -0.5 564,737 - -0.2 564,737 - +1.3 564,776 - +0.1 564,803 + +0.5 564,803 + -1.4 564,804 - -1.4 564,843 + -0.6 564,844 - -0.4 564,908 - -0.7 564,933 + +0.4 564,974 + -1.1 564,975 - -0.1 565,005 + -1.0 565,005 + +0.5 565,032 + +0.7 565,033 - +0.7 565,033 - -0.1 565,034 + +0.4 565,034 + -0.2 565,034 + -1.1 565,034 + -0.5 565,034 + -0.4 565,034 + +0.7 565,035 - -0.2 565,035 - -0.7 565,035 - -0.1 565,035 - -0.7 565,035 - -0.6 565,035 - +0.3 565,035 - -0.9 565,036 + -0.1 565,037 - -0.4 565,037 - -0.0 565,095 + +0.4 565,095 + +0.4 565,130 + -0.8 565,131 - -1.3 565,131 - -0.3 565,172 + +0.0 565,172 + +0.3 565,172 + +1.5 565,173 - -0.9 565,173 - -0.1
Or see this region's nucleotide sequence