Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02157 and H281DRAFT_02158 are separated by 297 nucleotides H281DRAFT_02158 and H281DRAFT_02159 are separated by 397 nucleotides
H281DRAFT_02157: H281DRAFT_02157 - cation diffusion facilitator family transporter, at 296,066 to 297,304
_02157
H281DRAFT_02158: H281DRAFT_02158 - DNA-binding protein H-NS, at 297,602 to 297,904
_02158
H281DRAFT_02159: H281DRAFT_02159 - hypothetical protein, at 298,302 to 298,964
_02159
Position (kb) 297
298 Strain fitness (log2 ratio) -2
-1
0
1
2 at 296.708 kb on - strand, within H281DRAFT_02157 at 296.883 kb on + strand, within H281DRAFT_02157 at 296.883 kb on + strand, within H281DRAFT_02157 at 297.035 kb on + strand, within H281DRAFT_02157 at 297.036 kb on - strand, within H281DRAFT_02157 at 297.036 kb on - strand, within H281DRAFT_02157 at 297.061 kb on + strand, within H281DRAFT_02157 at 297.061 kb on + strand, within H281DRAFT_02157 at 297.061 kb on + strand, within H281DRAFT_02157 at 297.061 kb on + strand, within H281DRAFT_02157 at 297.061 kb on + strand, within H281DRAFT_02157 at 297.062 kb on - strand, within H281DRAFT_02157 at 297.062 kb on - strand, within H281DRAFT_02157 at 297.069 kb on + strand, within H281DRAFT_02157 at 297.070 kb on - strand, within H281DRAFT_02157 at 297.221 kb on + strand at 297.238 kb on + strand at 297.250 kb on + strand at 297.251 kb on - strand at 297.251 kb on - strand at 297.331 kb on + strand at 297.331 kb on + strand at 297.331 kb on + strand at 297.332 kb on - strand at 297.356 kb on - strand at 297.438 kb on - strand at 297.466 kb on - strand at 297.553 kb on + strand at 297.578 kb on + strand at 297.579 kb on - strand at 297.700 kb on - strand, within H281DRAFT_02158 at 297.746 kb on - strand, within H281DRAFT_02158 at 297.895 kb on - strand at 297.904 kb on + strand at 297.905 kb on - strand at 297.927 kb on - strand at 298.037 kb on - strand at 298.040 kb on - strand at 298.040 kb on - strand at 298.040 kb on - strand at 298.102 kb on - strand at 298.141 kb on - strand at 298.145 kb on - strand at 298.153 kb on - strand at 298.220 kb on + strand at 298.232 kb on + strand at 298.233 kb on - strand at 298.233 kb on - strand at 298.233 kb on - strand at 298.233 kb on - strand at 298.233 kb on - strand at 298.238 kb on - strand at 298.296 kb on - strand at 298.303 kb on + strand at 298.304 kb on - strand at 298.408 kb on - strand, within H281DRAFT_02159 at 298.408 kb on - strand, within H281DRAFT_02159 at 298.408 kb on - strand, within H281DRAFT_02159 at 298.482 kb on + strand, within H281DRAFT_02159 at 298.482 kb on + strand, within H281DRAFT_02159 at 298.482 kb on + strand, within H281DRAFT_02159 at 298.483 kb on - strand, within H281DRAFT_02159 at 298.483 kb on - strand, within H281DRAFT_02159 at 298.483 kb on - strand, within H281DRAFT_02159 at 298.573 kb on + strand, within H281DRAFT_02159 at 298.573 kb on + strand, within H281DRAFT_02159 at 298.574 kb on - strand, within H281DRAFT_02159 at 298.574 kb on - strand, within H281DRAFT_02159 at 298.608 kb on - strand, within H281DRAFT_02159 at 298.608 kb on - strand, within H281DRAFT_02159 at 298.628 kb on - strand, within H281DRAFT_02159 at 298.648 kb on + strand, within H281DRAFT_02159 at 298.648 kb on + strand, within H281DRAFT_02159 at 298.731 kb on + strand, within H281DRAFT_02159 at 298.731 kb on + strand, within H281DRAFT_02159 at 298.732 kb on - strand, within H281DRAFT_02159 at 298.732 kb on - strand, within H281DRAFT_02159 at 298.732 kb on - strand, within H281DRAFT_02159 at 298.732 kb on - strand, within H281DRAFT_02159 at 298.796 kb on + strand, within H281DRAFT_02159 at 298.797 kb on - strand, within H281DRAFT_02159 at 298.797 kb on - strand, within H281DRAFT_02159 at 298.815 kb on + strand, within H281DRAFT_02159 at 298.816 kb on - strand, within H281DRAFT_02159
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 296,708 - H281DRAFT_02157 0.52 -1.3 296,883 + H281DRAFT_02157 0.66 -1.7 296,883 + H281DRAFT_02157 0.66 -0.7 297,035 + H281DRAFT_02157 0.78 -2.7 297,036 - H281DRAFT_02157 0.78 -0.7 297,036 - H281DRAFT_02157 0.78 -1.4 297,061 + H281DRAFT_02157 0.80 -1.0 297,061 + H281DRAFT_02157 0.80 -2.4 297,061 + H281DRAFT_02157 0.80 +0.1 297,061 + H281DRAFT_02157 0.80 -1.3 297,061 + H281DRAFT_02157 0.80 -0.5 297,062 - H281DRAFT_02157 0.80 +0.0 297,062 - H281DRAFT_02157 0.80 -0.4 297,069 + H281DRAFT_02157 0.81 -1.3 297,070 - H281DRAFT_02157 0.81 -1.2 297,221 + -0.9 297,238 + -0.7 297,250 + -0.4 297,251 - -2.1 297,251 - -0.7 297,331 + +0.1 297,331 + -0.9 297,331 + -0.5 297,332 - -0.3 297,356 - -1.2 297,438 - -1.2 297,466 - +0.7 297,553 + +0.9 297,578 + +0.3 297,579 - -1.8 297,700 - H281DRAFT_02158 0.32 -2.2 297,746 - H281DRAFT_02158 0.48 -1.1 297,895 - -1.1 297,904 + +0.9 297,905 - -2.4 297,927 - +1.8 298,037 - +2.2 298,040 - +2.1 298,040 - +2.5 298,040 - +1.7 298,102 - +1.7 298,141 - +1.6 298,145 - +1.5 298,153 - +1.7 298,220 + -0.8 298,232 + -0.3 298,233 - +0.4 298,233 - +1.2 298,233 - +1.7 298,233 - +2.3 298,233 - +0.9 298,238 - +0.7 298,296 - -2.7 298,303 + -0.1 298,304 - +0.9 298,408 - H281DRAFT_02159 0.16 +0.7 298,408 - H281DRAFT_02159 0.16 +1.8 298,408 - H281DRAFT_02159 0.16 +1.1 298,482 + H281DRAFT_02159 0.27 +0.9 298,482 + H281DRAFT_02159 0.27 +1.1 298,482 + H281DRAFT_02159 0.27 -1.9 298,483 - H281DRAFT_02159 0.27 +0.7 298,483 - H281DRAFT_02159 0.27 +0.2 298,483 - H281DRAFT_02159 0.27 +0.6 298,573 + H281DRAFT_02159 0.41 -1.9 298,573 + H281DRAFT_02159 0.41 +1.6 298,574 - H281DRAFT_02159 0.41 +0.2 298,574 - H281DRAFT_02159 0.41 +0.4 298,608 - H281DRAFT_02159 0.46 -0.5 298,608 - H281DRAFT_02159 0.46 +1.1 298,628 - H281DRAFT_02159 0.49 -0.0 298,648 + H281DRAFT_02159 0.52 +1.9 298,648 + H281DRAFT_02159 0.52 -1.2 298,731 + H281DRAFT_02159 0.65 +0.4 298,731 + H281DRAFT_02159 0.65 +0.0 298,732 - H281DRAFT_02159 0.65 +1.5 298,732 - H281DRAFT_02159 0.65 -1.3 298,732 - H281DRAFT_02159 0.65 -0.3 298,732 - H281DRAFT_02159 0.65 -0.8 298,796 + H281DRAFT_02159 0.75 -0.9 298,797 - H281DRAFT_02159 0.75 -0.8 298,797 - H281DRAFT_02159 0.75 -2.4 298,815 + H281DRAFT_02159 0.77 -0.8 298,816 - H281DRAFT_02159 0.78 +0.9
Or see this region's nucleotide sequence