Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01250 and H281DRAFT_01251 are separated by 27 nucleotides H281DRAFT_01251 and H281DRAFT_01252 overlap by 32 nucleotides H281DRAFT_01252 and H281DRAFT_01253 are separated by 35 nucleotides
H281DRAFT_01250: H281DRAFT_01250 - Uncharacterized conserved protein YbjT, contains NAD(P)-binding and DUF2867 domains, at 86,763 to 87,635
_01250
H281DRAFT_01251: H281DRAFT_01251 - NADPH:quinone reductase, at 87,663 to 88,595
_01251
H281DRAFT_01252: H281DRAFT_01252 - hypothetical protein, at 88,564 to 88,668
_01252
H281DRAFT_01253: H281DRAFT_01253 - DNA-binding transcriptional regulator, LysR family, at 88,704 to 89,588
_01253
Position (kb) 88
89 Strain fitness (log2 ratio) -1
0
1
2
3 at 87.600 kb on + strand at 87.600 kb on + strand at 87.629 kb on + strand at 87.630 kb on - strand at 87.630 kb on - strand at 87.972 kb on + strand, within H281DRAFT_01251 at 88.046 kb on - strand, within H281DRAFT_01251 at 88.063 kb on - strand, within H281DRAFT_01251 at 88.102 kb on + strand, within H281DRAFT_01251 at 88.185 kb on - strand, within H281DRAFT_01251 at 88.439 kb on - strand, within H281DRAFT_01251 at 88.561 kb on + strand at 88.595 kb on + strand at 88.595 kb on + strand at 88.595 kb on + strand at 88.595 kb on + strand at 88.596 kb on - strand, within H281DRAFT_01252 at 88.596 kb on - strand, within H281DRAFT_01252 at 88.596 kb on - strand, within H281DRAFT_01252 at 88.596 kb on - strand, within H281DRAFT_01252 at 88.927 kb on + strand, within H281DRAFT_01253 at 89.053 kb on - strand, within H281DRAFT_01253 at 89.574 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 87,600 + -0.9 87,600 + -0.8 87,629 + +0.3 87,630 - -0.0 87,630 - +0.3 87,972 + H281DRAFT_01251 0.33 +0.9 88,046 - H281DRAFT_01251 0.41 -1.0 88,063 - H281DRAFT_01251 0.43 -0.8 88,102 + H281DRAFT_01251 0.47 -0.3 88,185 - H281DRAFT_01251 0.56 -1.6 88,439 - H281DRAFT_01251 0.83 -1.6 88,561 + -1.3 88,595 + +0.2 88,595 + +0.1 88,595 + +2.6 88,595 + -1.0 88,596 - H281DRAFT_01252 0.30 +0.0 88,596 - H281DRAFT_01252 0.30 +0.9 88,596 - H281DRAFT_01252 0.30 -0.3 88,596 - H281DRAFT_01252 0.30 +3.1 88,927 + H281DRAFT_01253 0.25 +0.1 89,053 - H281DRAFT_01253 0.39 -0.8 89,574 - +0.4
Or see this region's nucleotide sequence