Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01022 and H281DRAFT_01023 are separated by 256 nucleotides H281DRAFT_01023 and H281DRAFT_01024 are separated by 298 nucleotides H281DRAFT_01024 and H281DRAFT_01025 are separated by 39 nucleotides
H281DRAFT_01022: H281DRAFT_01022 - GntR family transcriptional regulator / MocR family aminotransferase, at 1,146,029 to 1,147,441
_01022
H281DRAFT_01023: H281DRAFT_01023 - filamentous hemagglutinin family N-terminal domain-containing protein, at 1,147,698 to 1,149,947
_01023
H281DRAFT_01024: H281DRAFT_01024 - hypothetical protein, at 1,150,246 to 1,150,554
_01024
H281DRAFT_01025: H281DRAFT_01025 - transcriptional regulator, MarR family, at 1,150,594 to 1,151,043
_01025
Position (kb) 1147
1148
1149
1150 Strain fitness (log2 ratio) -1
0
1
2 at 1146.730 kb on - strand, within H281DRAFT_01022 at 1146.734 kb on + strand, within H281DRAFT_01022 at 1147.152 kb on + strand, within H281DRAFT_01022 at 1147.155 kb on - strand, within H281DRAFT_01022 at 1147.874 kb on + strand at 1148.074 kb on + strand, within H281DRAFT_01023 at 1148.075 kb on - strand, within H281DRAFT_01023 at 1148.075 kb on - strand, within H281DRAFT_01023 at 1148.175 kb on + strand, within H281DRAFT_01023 at 1148.176 kb on - strand, within H281DRAFT_01023 at 1148.504 kb on + strand, within H281DRAFT_01023 at 1148.551 kb on + strand, within H281DRAFT_01023 at 1148.551 kb on + strand, within H281DRAFT_01023 at 1148.801 kb on + strand, within H281DRAFT_01023 at 1149.197 kb on - strand, within H281DRAFT_01023 at 1149.322 kb on - strand at 1150.037 kb on + strand at 1150.037 kb on + strand at 1150.154 kb on - strand at 1150.306 kb on + strand, within H281DRAFT_01024 at 1150.307 kb on - strand, within H281DRAFT_01024
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 1,146,730 - H281DRAFT_01022 0.50 +0.3 1,146,734 + H281DRAFT_01022 0.50 +0.2 1,147,152 + H281DRAFT_01022 0.79 -0.9 1,147,155 - H281DRAFT_01022 0.80 -0.5 1,147,874 + -0.9 1,148,074 + H281DRAFT_01023 0.17 +0.9 1,148,075 - H281DRAFT_01023 0.17 +1.2 1,148,075 - H281DRAFT_01023 0.17 +0.2 1,148,175 + H281DRAFT_01023 0.21 -0.0 1,148,176 - H281DRAFT_01023 0.21 +1.3 1,148,504 + H281DRAFT_01023 0.36 -0.1 1,148,551 + H281DRAFT_01023 0.38 +0.4 1,148,551 + H281DRAFT_01023 0.38 +0.2 1,148,801 + H281DRAFT_01023 0.49 -0.1 1,149,197 - H281DRAFT_01023 0.67 +1.1 1,149,322 - -0.3 1,150,037 + +0.7 1,150,037 + +0.7 1,150,154 - -0.3 1,150,306 + H281DRAFT_01024 0.19 +1.9 1,150,307 - H281DRAFT_01024 0.20 -0.4
Or see this region's nucleotide sequence