Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01013 and H281DRAFT_01014 are separated by 66 nucleotides H281DRAFT_01014 and H281DRAFT_01015 are separated by 96 nucleotides H281DRAFT_01015 and H281DRAFT_01016 are separated by 140 nucleotides H281DRAFT_01016 and H281DRAFT_01017 are separated by 76 nucleotides
H281DRAFT_01013: H281DRAFT_01013 - hypothetical protein, at 1,138,907 to 1,139,377
_01013
H281DRAFT_01014: H281DRAFT_01014 - glutathione S-transferase, at 1,139,444 to 1,140,139
_01014
H281DRAFT_01015: H281DRAFT_01015 - uncharacterized peroxidase-related enzyme, at 1,140,236 to 1,140,781
_01015
H281DRAFT_01016: H281DRAFT_01016 - Nitroreductase, at 1,140,922 to 1,141,557
_01016
H281DRAFT_01017: H281DRAFT_01017 - putative redox protein, at 1,141,634 to 1,142,398
_01017
Position (kb) 1140
1141 Strain fitness (log2 ratio) -1
0
1 at 1140.808 kb on + strand at 1141.109 kb on + strand, within H281DRAFT_01016 at 1141.354 kb on + strand, within H281DRAFT_01016 at 1141.381 kb on + strand, within H281DRAFT_01016 at 1141.488 kb on - strand, within H281DRAFT_01016
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 1,140,808 + +1.0 1,141,109 + H281DRAFT_01016 0.29 -0.4 1,141,354 + H281DRAFT_01016 0.68 +1.0 1,141,381 + H281DRAFT_01016 0.72 -0.1 1,141,488 - H281DRAFT_01016 0.89 +1.1
Or see this region's nucleotide sequence