Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01012

Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01010 and H281DRAFT_01011 are separated by 54 nucleotidesH281DRAFT_01011 and H281DRAFT_01012 are separated by 172 nucleotidesH281DRAFT_01012 and H281DRAFT_01013 are separated by 33 nucleotidesH281DRAFT_01013 and H281DRAFT_01014 are separated by 66 nucleotides H281DRAFT_01010: H281DRAFT_01010 - Protein of unknown function (DUF3788), at 1,137,211 to 1,137,690 _01010 H281DRAFT_01011: H281DRAFT_01011 - Uncharacterized membrane protein YkgB, at 1,137,745 to 1,138,251 _01011 H281DRAFT_01012: H281DRAFT_01012 - Ribosomal protein S18 acetylase RimI, at 1,138,424 to 1,138,873 _01012 H281DRAFT_01013: H281DRAFT_01013 - hypothetical protein, at 1,138,907 to 1,139,377 _01013 H281DRAFT_01014: H281DRAFT_01014 - glutathione S-transferase, at 1,139,444 to 1,140,139 _01014 Position (kb) 1138 1139Strain fitness (log2 ratio) -2 -1 0 1at 1137.500 kb on + strand, within H281DRAFT_01010at 1137.500 kb on + strand, within H281DRAFT_01010at 1137.501 kb on - strand, within H281DRAFT_01010at 1137.501 kb on - strand, within H281DRAFT_01010at 1137.726 kb on + strandat 1137.829 kb on - strand, within H281DRAFT_01011at 1137.987 kb on + strand, within H281DRAFT_01011at 1138.364 kb on + strandat 1138.665 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
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1,137,500 + H281DRAFT_01010 0.60 -0.4
1,137,500 + H281DRAFT_01010 0.60 -0.0
1,137,501 - H281DRAFT_01010 0.60 -0.7
1,137,501 - H281DRAFT_01010 0.60 +0.2
1,137,726 + +0.4
1,137,829 - H281DRAFT_01011 0.17 -1.8
1,137,987 + H281DRAFT_01011 0.48 +0.3
1,138,364 + +0.2
1,138,665 + +0.7

Or see this region's nucleotide sequence