Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00775 and H281DRAFT_00776 are separated by 110 nucleotides H281DRAFT_00776 and H281DRAFT_00777 are separated by 107 nucleotides H281DRAFT_00777 and H281DRAFT_00778 are separated by 306 nucleotides
H281DRAFT_00775: H281DRAFT_00775 - Protein of unknown function (DUF2939), at 862,143 to 862,826
_00775
H281DRAFT_00776: H281DRAFT_00776 - hypothetical protein, at 862,937 to 863,293
_00776
H281DRAFT_00777: H281DRAFT_00777 - SOS-response transcriptional repressor, LexA, at 863,401 to 864,051
_00777
H281DRAFT_00778: H281DRAFT_00778 - sulfate transport system substrate-binding protein, at 864,358 to 865,407
_00778
Position (kb) 863
864
865 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 862.648 kb on + strand, within H281DRAFT_00775 at 862.648 kb on + strand, within H281DRAFT_00775 at 862.649 kb on - strand, within H281DRAFT_00775 at 862.709 kb on + strand, within H281DRAFT_00775 at 862.711 kb on + strand, within H281DRAFT_00775 at 862.711 kb on + strand, within H281DRAFT_00775 at 862.723 kb on + strand, within H281DRAFT_00775 at 862.723 kb on + strand, within H281DRAFT_00775 at 862.724 kb on - strand, within H281DRAFT_00775 at 862.724 kb on - strand, within H281DRAFT_00775 at 862.773 kb on - strand at 863.050 kb on - strand, within H281DRAFT_00776 at 863.050 kb on - strand, within H281DRAFT_00776 at 863.050 kb on - strand, within H281DRAFT_00776 at 863.225 kb on + strand, within H281DRAFT_00776 at 863.225 kb on + strand, within H281DRAFT_00776 at 863.676 kb on - strand, within H281DRAFT_00777 at 863.715 kb on - strand, within H281DRAFT_00777 at 863.728 kb on - strand at 864.122 kb on - strand at 864.156 kb on - strand at 864.251 kb on - strand at 864.271 kb on - strand at 864.499 kb on + strand, within H281DRAFT_00778 at 864.520 kb on + strand, within H281DRAFT_00778 at 864.671 kb on - strand, within H281DRAFT_00778 at 864.671 kb on - strand, within H281DRAFT_00778 at 864.899 kb on - strand, within H281DRAFT_00778 at 864.958 kb on + strand, within H281DRAFT_00778
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 862,648 + H281DRAFT_00775 0.74 -0.8 862,648 + H281DRAFT_00775 0.74 -0.9 862,649 - H281DRAFT_00775 0.74 -0.5 862,709 + H281DRAFT_00775 0.83 -0.2 862,711 + H281DRAFT_00775 0.83 +0.2 862,711 + H281DRAFT_00775 0.83 +2.1 862,723 + H281DRAFT_00775 0.85 +0.1 862,723 + H281DRAFT_00775 0.85 +1.1 862,724 - H281DRAFT_00775 0.85 -0.2 862,724 - H281DRAFT_00775 0.85 +1.0 862,773 - -0.4 863,050 - H281DRAFT_00776 0.32 -0.2 863,050 - H281DRAFT_00776 0.32 +1.7 863,050 - H281DRAFT_00776 0.32 +0.1 863,225 + H281DRAFT_00776 0.81 +0.8 863,225 + H281DRAFT_00776 0.81 -0.5 863,676 - H281DRAFT_00777 0.42 -0.6 863,715 - H281DRAFT_00777 0.48 -4.0 863,728 - +1.4 864,122 - +0.3 864,156 - +0.8 864,251 - +0.4 864,271 - +1.0 864,499 + H281DRAFT_00778 0.13 -0.3 864,520 + H281DRAFT_00778 0.15 -0.9 864,671 - H281DRAFT_00778 0.30 -0.0 864,671 - H281DRAFT_00778 0.30 -0.7 864,899 - H281DRAFT_00778 0.52 +0.8 864,958 + H281DRAFT_00778 0.57 +0.3
Or see this region's nucleotide sequence