Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00604 and H281DRAFT_00605 overlap by 4 nucleotides H281DRAFT_00605 and H281DRAFT_00606 are separated by 166 nucleotides H281DRAFT_00606 and H281DRAFT_00607 are separated by 81 nucleotides
H281DRAFT_00604: H281DRAFT_00604 - DNA ligase (NAD+), at 676,715 to 678,781
_00604
H281DRAFT_00605: H281DRAFT_00605 - peptide deformylase, at 678,778 to 679,311
_00605
H281DRAFT_00606: H281DRAFT_00606 - 23S rRNA pseudouridine2604 synthase, at 679,478 to 680,209
_00606
H281DRAFT_00607: H281DRAFT_00607 - hypothetical protein, at 680,291 to 681,580
_00607
Position (kb) 679
680
681 Strain fitness (log2 ratio) -2
-1
0
1 at 678.757 kb on + strand at 678.757 kb on + strand at 678.777 kb on + strand at 678.778 kb on - strand at 678.778 kb on - strand at 679.029 kb on + strand, within H281DRAFT_00605 at 679.030 kb on - strand, within H281DRAFT_00605 at 679.126 kb on + strand, within H281DRAFT_00605 at 679.145 kb on - strand, within H281DRAFT_00605 at 679.193 kb on + strand, within H281DRAFT_00605 at 679.266 kb on + strand at 679.299 kb on + strand at 679.503 kb on + strand at 679.504 kb on - strand at 679.504 kb on - strand at 679.788 kb on + strand, within H281DRAFT_00606 at 679.788 kb on + strand, within H281DRAFT_00606 at 679.788 kb on + strand, within H281DRAFT_00606 at 679.789 kb on - strand, within H281DRAFT_00606 at 679.789 kb on - strand, within H281DRAFT_00606 at 680.016 kb on + strand, within H281DRAFT_00606 at 680.029 kb on + strand, within H281DRAFT_00606 at 680.118 kb on - strand, within H281DRAFT_00606 at 680.861 kb on - strand, within H281DRAFT_00607
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 678,757 + -0.9 678,757 + -0.1 678,777 + -1.3 678,778 - -0.8 678,778 - -2.2 679,029 + H281DRAFT_00605 0.47 +0.0 679,030 - H281DRAFT_00605 0.47 +0.0 679,126 + H281DRAFT_00605 0.65 -0.0 679,145 - H281DRAFT_00605 0.69 +0.9 679,193 + H281DRAFT_00605 0.78 -0.6 679,266 + -0.2 679,299 + -0.6 679,503 + -0.5 679,504 - +0.5 679,504 - -0.2 679,788 + H281DRAFT_00606 0.42 -2.0 679,788 + H281DRAFT_00606 0.42 -0.8 679,788 + H281DRAFT_00606 0.42 +1.0 679,789 - H281DRAFT_00606 0.42 -1.3 679,789 - H281DRAFT_00606 0.42 +0.9 680,016 + H281DRAFT_00606 0.73 -0.8 680,029 + H281DRAFT_00606 0.75 +0.0 680,118 - H281DRAFT_00606 0.87 -0.0 680,861 - H281DRAFT_00607 0.44 -0.9
Or see this region's nucleotide sequence