Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00017 and H281DRAFT_00018 are separated by 87 nucleotides H281DRAFT_00018 and H281DRAFT_00019 are separated by 670 nucleotides
H281DRAFT_00017: H281DRAFT_00017 - hypothetical protein, at 18,368 to 19,171
_00017
H281DRAFT_00018: H281DRAFT_00018 - hypothetical protein, at 19,259 to 19,903
_00018
H281DRAFT_00019: H281DRAFT_00019 - transcriptional regulator, LysR family, at 20,574 to 21,485
_00019
Position (kb) 19
20 Strain fitness (log2 ratio) -2
-1
0
1
2 at 18.282 kb on - strand at 18.343 kb on + strand at 18.344 kb on - strand at 18.345 kb on + strand at 18.345 kb on + strand at 18.346 kb on - strand at 18.346 kb on - strand at 18.737 kb on + strand, within H281DRAFT_00017 at 18.740 kb on - strand, within H281DRAFT_00017 at 18.804 kb on - strand, within H281DRAFT_00017 at 18.833 kb on + strand, within H281DRAFT_00017 at 18.833 kb on + strand, within H281DRAFT_00017 at 18.834 kb on - strand, within H281DRAFT_00017 at 18.914 kb on - strand, within H281DRAFT_00017 at 18.954 kb on - strand, within H281DRAFT_00017 at 18.954 kb on - strand, within H281DRAFT_00017 at 19.116 kb on + strand at 19.248 kb on + strand at 19.432 kb on + strand, within H281DRAFT_00018 at 19.599 kb on + strand, within H281DRAFT_00018 at 19.635 kb on + strand, within H281DRAFT_00018 at 19.637 kb on + strand, within H281DRAFT_00018 at 19.638 kb on - strand, within H281DRAFT_00018 at 19.680 kb on - strand, within H281DRAFT_00018 at 19.684 kb on + strand, within H281DRAFT_00018 at 19.684 kb on + strand, within H281DRAFT_00018 at 19.685 kb on - strand, within H281DRAFT_00018 at 19.685 kb on - strand, within H281DRAFT_00018 at 19.685 kb on - strand, within H281DRAFT_00018 at 19.685 kb on - strand, within H281DRAFT_00018 at 19.755 kb on + strand, within H281DRAFT_00018 at 19.756 kb on - strand, within H281DRAFT_00018 at 19.756 kb on - strand, within H281DRAFT_00018 at 19.793 kb on - strand at 19.836 kb on + strand, within H281DRAFT_00018 at 20.050 kb on - strand at 20.050 kb on - strand at 20.050 kb on - strand at 20.074 kb on + strand at 20.180 kb on + strand at 20.181 kb on - strand at 20.181 kb on - strand at 20.366 kb on + strand at 20.418 kb on + strand at 20.418 kb on + strand at 20.419 kb on - strand at 20.419 kb on - strand at 20.419 kb on - strand at 20.424 kb on - strand at 20.576 kb on - strand at 20.595 kb on + strand at 20.596 kb on - strand at 20.628 kb on + strand at 20.740 kb on + strand, within H281DRAFT_00019 at 20.803 kb on - strand, within H281DRAFT_00019 at 20.885 kb on + strand, within H281DRAFT_00019 at 20.896 kb on + strand, within H281DRAFT_00019 at 20.896 kb on + strand, within H281DRAFT_00019 at 20.896 kb on + strand, within H281DRAFT_00019 at 20.897 kb on - strand, within H281DRAFT_00019
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 18,282 - +0.0 18,343 + -1.3 18,344 - -2.0 18,345 + +0.3 18,345 + -0.4 18,346 - -0.2 18,346 - -0.2 18,737 + H281DRAFT_00017 0.46 -0.6 18,740 - H281DRAFT_00017 0.46 -1.5 18,804 - H281DRAFT_00017 0.54 -1.5 18,833 + H281DRAFT_00017 0.58 +0.4 18,833 + H281DRAFT_00017 0.58 -2.2 18,834 - H281DRAFT_00017 0.58 -1.2 18,914 - H281DRAFT_00017 0.68 +0.7 18,954 - H281DRAFT_00017 0.73 +0.3 18,954 - H281DRAFT_00017 0.73 +1.2 19,116 + -1.2 19,248 + -0.4 19,432 + H281DRAFT_00018 0.27 -0.8 19,599 + H281DRAFT_00018 0.53 +1.0 19,635 + H281DRAFT_00018 0.58 -0.7 19,637 + H281DRAFT_00018 0.59 +0.5 19,638 - H281DRAFT_00018 0.59 +0.3 19,680 - H281DRAFT_00018 0.65 -0.1 19,684 + H281DRAFT_00018 0.66 +0.2 19,684 + H281DRAFT_00018 0.66 -0.4 19,685 - H281DRAFT_00018 0.66 -0.2 19,685 - H281DRAFT_00018 0.66 +0.2 19,685 - H281DRAFT_00018 0.66 -0.6 19,685 - H281DRAFT_00018 0.66 -0.4 19,755 + H281DRAFT_00018 0.77 +0.1 19,756 - H281DRAFT_00018 0.77 +0.1 19,756 - H281DRAFT_00018 0.77 -0.2 19,793 - +1.6 19,836 + H281DRAFT_00018 0.89 -0.3 20,050 - -1.0 20,050 - -0.4 20,050 - +0.8 20,074 + -2.2 20,180 + +1.8 20,181 - -0.3 20,181 - -0.4 20,366 + -0.8 20,418 + -0.0 20,418 + +0.6 20,419 - +0.4 20,419 - +0.6 20,419 - -0.6 20,424 - -0.2 20,576 - -1.2 20,595 + -0.2 20,596 - -1.7 20,628 + -1.3 20,740 + H281DRAFT_00019 0.18 +0.2 20,803 - H281DRAFT_00019 0.25 -0.0 20,885 + H281DRAFT_00019 0.34 -1.3 20,896 + H281DRAFT_00019 0.35 +1.3 20,896 + H281DRAFT_00019 0.35 +0.2 20,896 + H281DRAFT_00019 0.35 +0.9 20,897 - H281DRAFT_00019 0.35 +0.9
Or see this region's nucleotide sequence