Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS21500 and BWI76_RS21505 are separated by 54 nucleotides BWI76_RS21505 and BWI76_RS21510 are separated by 120 nucleotides BWI76_RS21510 and BWI76_RS21515 are separated by 39 nucleotides
BWI76_RS21500: BWI76_RS21500 - membrane protein, at 4,503,460 to 4,504,830
_RS21500
BWI76_RS21505: BWI76_RS21505 - hypothetical protein, at 4,504,885 to 4,505,322
_RS21505
BWI76_RS21510: BWI76_RS21510 - 50S ribosomal protein L19, at 4,505,443 to 4,505,790
_RS21510
BWI76_RS21515: BWI76_RS21515 - tRNA (guanosine(37)-N1)-methyltransferase TrmD, at 4,505,830 to 4,506,597
_RS21515
Position (kb) 4504
4505
4506 Strain fitness (log2 ratio) -1
0
1 at 4503.891 kb on + strand, within BWI76_RS21500 at 4504.376 kb on + strand, within BWI76_RS21500 at 4504.688 kb on - strand, within BWI76_RS21500 at 4504.802 kb on - strand at 4504.808 kb on - strand at 4504.940 kb on - strand, within BWI76_RS21505
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 4,503,891 + BWI76_RS21500 0.31 +0.8 4,504,376 + BWI76_RS21500 0.67 +1.0 4,504,688 - BWI76_RS21500 0.90 -0.1 4,504,802 - +1.7 4,504,808 - +0.5 4,504,940 - BWI76_RS21505 0.13 -1.0
Or see this region's nucleotide sequence