Experiment: Varel_Bryant_medium_Glucose with Sulfamonomethoxine 0.2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0209 and BT0210 are separated by 45 nucleotides BT0210 and BT0211 are separated by 17 nucleotides
BT0209: BT0209 - hypothetical protein (NCBI ptt file), at 228,135 to 230,087
BT0209
BT0210: BT0210 - leucine-rich repeat protein, function unknown (NCBI ptt file), at 230,133 to 232,847
BT0210
BT0211: BT0211 - hypothetical protein (NCBI ptt file), at 232,865 to 234,847
BT0211
Position (kb) 230
231
232
233 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 229.152 kb on - strand, within BT0209 at 229.152 kb on - strand, within BT0209 at 229.164 kb on + strand, within BT0209 at 229.238 kb on + strand, within BT0209 at 229.293 kb on + strand, within BT0209 at 229.357 kb on + strand, within BT0209 at 229.404 kb on - strand, within BT0209 at 229.411 kb on - strand, within BT0209 at 229.413 kb on - strand, within BT0209 at 229.446 kb on + strand, within BT0209 at 229.597 kb on + strand, within BT0209 at 229.606 kb on - strand, within BT0209 at 229.732 kb on + strand, within BT0209 at 229.733 kb on - strand, within BT0209 at 229.737 kb on - strand, within BT0209 at 229.764 kb on - strand, within BT0209 at 229.779 kb on - strand, within BT0209 at 229.794 kb on - strand, within BT0209 at 229.797 kb on + strand, within BT0209 at 229.892 kb on - strand at 229.892 kb on - strand at 230.067 kb on - strand at 230.082 kb on - strand at 230.140 kb on + strand at 230.245 kb on - strand at 230.251 kb on - strand at 230.269 kb on - strand at 230.270 kb on + strand at 230.406 kb on + strand, within BT0210 at 230.438 kb on + strand, within BT0210 at 230.466 kb on - strand, within BT0210 at 230.558 kb on - strand, within BT0210 at 230.642 kb on + strand, within BT0210 at 230.754 kb on + strand, within BT0210 at 230.816 kb on - strand, within BT0210 at 230.822 kb on - strand, within BT0210 at 230.863 kb on - strand, within BT0210 at 230.880 kb on - strand, within BT0210 at 231.028 kb on - strand, within BT0210 at 231.081 kb on + strand, within BT0210 at 231.082 kb on - strand, within BT0210 at 231.102 kb on - strand, within BT0210 at 231.102 kb on - strand, within BT0210 at 231.180 kb on - strand, within BT0210 at 231.263 kb on - strand, within BT0210 at 231.359 kb on + strand, within BT0210 at 231.369 kb on - strand, within BT0210 at 231.378 kb on - strand, within BT0210 at 231.498 kb on - strand, within BT0210 at 231.516 kb on - strand, within BT0210 at 231.605 kb on + strand, within BT0210 at 231.681 kb on - strand, within BT0210 at 231.878 kb on + strand, within BT0210 at 231.888 kb on - strand, within BT0210 at 231.946 kb on + strand, within BT0210 at 231.966 kb on - strand, within BT0210 at 231.970 kb on + strand, within BT0210 at 232.016 kb on + strand, within BT0210 at 232.027 kb on - strand, within BT0210 at 232.101 kb on - strand, within BT0210 at 232.101 kb on - strand, within BT0210 at 232.261 kb on - strand, within BT0210 at 232.339 kb on + strand, within BT0210 at 232.389 kb on - strand, within BT0210 at 232.415 kb on - strand, within BT0210 at 232.466 kb on + strand, within BT0210 at 232.472 kb on - strand, within BT0210 at 232.477 kb on - strand, within BT0210 at 232.501 kb on - strand, within BT0210 at 232.626 kb on - strand at 232.779 kb on - strand at 232.793 kb on - strand at 232.799 kb on + strand at 232.800 kb on - strand at 232.850 kb on + strand at 232.861 kb on - strand at 233.123 kb on - strand, within BT0211 at 233.143 kb on + strand, within BT0211 at 233.155 kb on - strand, within BT0211 at 233.294 kb on - strand, within BT0211 at 233.307 kb on + strand, within BT0211 at 233.663 kb on - strand, within BT0211 at 233.665 kb on + strand, within BT0211 at 233.666 kb on - strand, within BT0211 at 233.753 kb on - strand, within BT0211 at 233.753 kb on - strand, within BT0211 at 233.778 kb on + strand, within BT0211 at 233.815 kb on - strand, within BT0211 at 233.815 kb on - strand, within BT0211
Per-strain Table
Position Strand Gene LocusTag Fraction Varel_Bryant_medium_Glucose with Sulfamonomethoxine 0.2 mM remove 229,152 - BT0209 0.52 -1.0 229,152 - BT0209 0.52 +1.0 229,164 + BT0209 0.53 -1.6 229,238 + BT0209 0.56 +0.0 229,293 + BT0209 0.59 +0.0 229,357 + BT0209 0.63 -2.1 229,404 - BT0209 0.65 -1.0 229,411 - BT0209 0.65 -1.6 229,413 - BT0209 0.65 +0.0 229,446 + BT0209 0.67 -1.7 229,597 + BT0209 0.75 -0.8 229,606 - BT0209 0.75 -1.0 229,732 + BT0209 0.82 -2.3 229,733 - BT0209 0.82 -2.0 229,737 - BT0209 0.82 +0.6 229,764 - BT0209 0.83 -1.2 229,779 - BT0209 0.84 +0.8 229,794 - BT0209 0.85 -2.6 229,797 + BT0209 0.85 -0.7 229,892 - -1.0 229,892 - +0.3 230,067 - -1.6 230,082 - -2.6 230,140 + -2.6 230,245 - -1.0 230,251 - -2.0 230,269 - -2.6 230,270 + +0.0 230,406 + BT0210 0.10 -3.8 230,438 + BT0210 0.11 -0.6 230,466 - BT0210 0.12 -2.4 230,558 - BT0210 0.16 -2.0 230,642 + BT0210 0.19 -1.0 230,754 + BT0210 0.23 +0.0 230,816 - BT0210 0.25 +0.0 230,822 - BT0210 0.25 -1.6 230,863 - BT0210 0.27 -2.2 230,880 - BT0210 0.28 -3.9 231,028 - BT0210 0.33 -2.1 231,081 + BT0210 0.35 -3.1 231,082 - BT0210 0.35 -1.3 231,102 - BT0210 0.36 -1.1 231,102 - BT0210 0.36 -0.3 231,180 - BT0210 0.39 -2.6 231,263 - BT0210 0.42 -2.6 231,359 + BT0210 0.45 +2.4 231,369 - BT0210 0.46 -2.0 231,378 - BT0210 0.46 -1.0 231,498 - BT0210 0.50 -1.0 231,516 - BT0210 0.51 -1.0 231,605 + BT0210 0.54 -1.1 231,681 - BT0210 0.57 +0.0 231,878 + BT0210 0.64 +0.0 231,888 - BT0210 0.65 -1.0 231,946 + BT0210 0.67 -2.3 231,966 - BT0210 0.68 -1.0 231,970 + BT0210 0.68 -2.3 232,016 + BT0210 0.69 +1.3 232,027 - BT0210 0.70 +0.5 232,101 - BT0210 0.72 -1.8 232,101 - BT0210 0.72 -1.0 232,261 - BT0210 0.78 -1.6 232,339 + BT0210 0.81 -0.8 232,389 - BT0210 0.83 -3.9 232,415 - BT0210 0.84 +0.8 232,466 + BT0210 0.86 -1.0 232,472 - BT0210 0.86 -1.0 232,477 - BT0210 0.86 -1.0 232,501 - BT0210 0.87 -2.1 232,626 - +1.0 232,779 - -2.0 232,793 - +1.0 232,799 + -2.3 232,800 - -2.6 232,850 + -2.3 232,861 - +0.0 233,123 - BT0211 0.13 +0.0 233,143 + BT0211 0.14 -1.6 233,155 - BT0211 0.15 -1.0 233,294 - BT0211 0.22 +0.3 233,307 + BT0211 0.22 +0.4 233,663 - BT0211 0.40 -3.7 233,665 + BT0211 0.40 +0.0 233,666 - BT0211 0.40 +0.0 233,753 - BT0211 0.45 +0.3 233,753 - BT0211 0.45 +0.0 233,778 + BT0211 0.46 -1.6 233,815 - BT0211 0.48 -0.6 233,815 - BT0211 0.48 +0.0
Or see this region's nucleotide sequence