Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS29480

Experiment: malate (C) and Ammonium chloride (N); with TAPS; with PEG

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	malate (C) and Ammonium chloride (N); with TAPS; with PEG
6,544,648	+				-1.2
6,544,649	-				+0.9
6,544,714	+				-0.4
6,544,714	+				-1.1
6,544,714	+				+0.1
6,544,715	-				-1.4
6,544,769	+				-1.0
6,544,769	+				-0.5
6,544,769	+				-0.3
6,544,769	+				+0.7
6,544,769	+				-0.9
6,544,769	+				+1.1
6,544,770	-				-1.4
6,544,770	-				+0.7
6,544,819	+				-1.5
6,545,457	+				-0.6
6,545,458	-				-0.5
6,545,469	-				+0.7
6,545,469	-				-0.5
6,545,469	-				-0.6
6,545,469	-				+0.2
6,545,469	-				+1.0
6,545,472	+				+1.7
6,545,472	+				+0.1
6,545,473	-				-0.1
6,545,473	-				-2.4
6,545,473	-				+0.3
6,545,473	-				-0.6
6,545,476	+				+1.5
6,545,476	+				+2.7
6,545,476	+				+1.7
6,545,476	+				+0.7
6,545,476	+				-0.4
6,545,476	+				+1.1
6,545,476	+				+0.7
6,545,476	+				+1.1
6,545,476	+				-0.6
6,545,476	+				+1.0
6,545,476	+				+1.7
6,545,476	+				+0.7
6,545,476	+				+0.7
6,545,476	+				+0.1
6,545,476	+				+0.1
6,545,477	-				-0.6
6,545,477	-				-0.9
6,545,477	-				-0.9
6,545,477	-				-0.4
6,545,477	-				-1.0
6,545,477	-				-0.0
6,545,477	-				+0.4
6,545,477	-				-1.1
6,545,491	+				+0.3
6,545,491	+				+0.3
6,545,491	+				+2.3
6,545,491	+				-0.6
6,545,491	+				+0.7
6,545,492	-				-1.0
6,545,492	-				-0.0
6,545,492	-				-1.5
6,545,492	-				-0.2
6,545,492	-				-0.6
6,545,492	-				-1.3
6,545,492	-				-1.4
6,545,492	-				-1.7
6,545,496	+				-0.3
6,545,496	+				-0.3
6,545,496	+				+0.3
6,545,496	+				+0.4
6,545,496	+				+0.1
6,545,496	+				-0.7
6,545,496	+				-0.1
6,545,497	-				-2.2
6,545,497	-				-0.2
6,545,523	+				-2.3
6,545,524	-				-3.2
6,545,524	-				-2.3
6,545,524	-				-2.3
6,545,524	-				-1.9
6,545,548	-				-1.9
6,545,553	+				-3.1
6,545,553	+				-1.3
6,545,553	+				-1.1
6,545,680	+		PFLU_RS29480	0.20	-0.3
6,545,680	+		PFLU_RS29480	0.20	-1.1
6,545,680	+		PFLU_RS29480	0.20	-3.1
6,545,680	+		PFLU_RS29480	0.20	-2.6
6,545,681	-		PFLU_RS29480	0.20	+0.7
6,545,681	-		PFLU_RS29480	0.20	-3.3
6,545,689	+		PFLU_RS29480	0.21	-2.8
6,545,689	+		PFLU_RS29480	0.21	-3.3
6,545,689	+		PFLU_RS29480	0.21	-3.7
6,545,690	-		PFLU_RS29480	0.21	-2.6
6,545,690	-		PFLU_RS29480	0.21	-1.6
6,545,690	-		PFLU_RS29480	0.21	-0.9
6,545,690	-		PFLU_RS29480	0.21	-1.2
6,545,690	-		PFLU_RS29480	0.21	-1.6
6,545,734	+		PFLU_RS29480	0.27	-3.1
6,545,735	-		PFLU_RS29480	0.27	-3.3
6,545,735	-		PFLU_RS29480	0.27	-3.6
6,545,735	-		PFLU_RS29480	0.27	-1.5
6,545,804	-		PFLU_RS29480	0.36	-2.4
6,545,804	-		PFLU_RS29480	0.36	-2.2
6,545,897	+		PFLU_RS29480	0.48	-2.9
6,545,897	+		PFLU_RS29480	0.48	-0.6
6,545,897	+		PFLU_RS29480	0.48	-1.7
6,545,898	-		PFLU_RS29480	0.48	-3.4
6,545,898	-		PFLU_RS29480	0.48	-1.6
6,545,898	-		PFLU_RS29480	0.48	-1.9
6,545,898	-		PFLU_RS29480	0.48	-1.6
6,545,898	-		PFLU_RS29480	0.48	-2.5
6,545,898	-		PFLU_RS29480	0.48	-2.5
6,545,898	-		PFLU_RS29480	0.48	-2.3
6,545,950	+		PFLU_RS29480	0.55	-2.6
6,545,950	+		PFLU_RS29480	0.55	-1.7
6,545,950	+		PFLU_RS29480	0.55	-2.7
6,545,951	-		PFLU_RS29480	0.55	-2.4
6,545,951	-		PFLU_RS29480	0.55	-3.0
6,545,951	-		PFLU_RS29480	0.55	-3.2
6,545,951	-		PFLU_RS29480	0.55	-2.8
6,545,956	+		PFLU_RS29480	0.55	-3.5
6,545,956	+		PFLU_RS29480	0.55	-2.0
6,545,956	+		PFLU_RS29480	0.55	-2.3
6,545,956	+		PFLU_RS29480	0.55	-3.4
6,545,956	+		PFLU_RS29480	0.55	-2.1
6,545,956	+		PFLU_RS29480	0.55	-2.9
6,545,956	+		PFLU_RS29480	0.55	-1.1
6,545,956	+		PFLU_RS29480	0.55	-3.4
6,545,956	+		PFLU_RS29480	0.55	-2.2
6,545,956	+		PFLU_RS29480	0.55	-1.1
6,545,956	+		PFLU_RS29480	0.55	-2.1
6,545,956	+		PFLU_RS29480	0.55	-2.2
6,545,956	+		PFLU_RS29480	0.55	-2.7
6,545,956	+		PFLU_RS29480	0.55	-3.2
6,545,957	-		PFLU_RS29480	0.56	-2.0
6,545,957	-		PFLU_RS29480	0.56	-1.5
6,545,957	-		PFLU_RS29480	0.56	-2.6
6,545,957	-		PFLU_RS29480	0.56	-2.0
6,545,957	-		PFLU_RS29480	0.56	-1.6
6,545,957	-		PFLU_RS29480	0.56	-2.8
6,545,957	-		PFLU_RS29480	0.56	-2.7
6,545,957	-		PFLU_RS29480	0.56	-1.1
6,545,957	-		PFLU_RS29480	0.56	-3.0
6,545,957	-		PFLU_RS29480	0.56	-2.0
6,545,957	-		PFLU_RS29480	0.56	-1.1
6,545,971	+		PFLU_RS29480	0.57	-4.3
6,545,971	+		PFLU_RS29480	0.57	-2.1
6,545,971	+		PFLU_RS29480	0.57	-2.6
6,545,971	+		PFLU_RS29480	0.57	-2.3
6,545,972	-		PFLU_RS29480	0.57	-1.9
6,545,972	-		PFLU_RS29480	0.57	-2.5
6,545,972	-		PFLU_RS29480	0.57	-1.3
6,545,972	-		PFLU_RS29480	0.57	-1.3
6,546,082	+		PFLU_RS29480	0.72	-4.3
6,546,082	+		PFLU_RS29480	0.72	-1.5
6,546,083	-		PFLU_RS29480	0.72	-1.6
6,546,083	-		PFLU_RS29480	0.72	-1.5
6,546,083	-		PFLU_RS29480	0.72	-2.0
6,546,083	-		PFLU_RS29480	0.72	-1.5
6,546,124	+		PFLU_RS29480	0.77	-3.7
6,546,124	+		PFLU_RS29480	0.77	-1.1
6,546,124	+		PFLU_RS29480	0.77	-0.0
6,546,124	+		PFLU_RS29480	0.77	-2.1
6,546,124	+		PFLU_RS29480	0.77	-1.9
6,546,125	-		PFLU_RS29480	0.77	-1.3
6,546,125	-		PFLU_RS29480	0.77	-3.0
6,546,125	-		PFLU_RS29480	0.77	-2.7
6,546,184	+		PFLU_RS29480	0.85	-2.0
6,546,185	-		PFLU_RS29480	0.85	-2.3
6,546,185	-		PFLU_RS29480	0.85	-2.1
6,546,280	+				-2.6
6,546,281	-				-2.2
6,546,363	+				+0.8
6,546,364	-				-0.2
6,546,390	+				+1.6
6,546,424	+		PFLU_RS29485	0.17	-0.1
6,546,424	+		PFLU_RS29485	0.17	+0.2
6,546,424	+		PFLU_RS29485	0.17	+0.0
6,546,424	+		PFLU_RS29485	0.17	+1.0
6,546,425	-		PFLU_RS29485	0.17	-0.6
6,546,512	+		PFLU_RS29485	0.41	-0.3
6,546,512	+		PFLU_RS29485	0.41	+0.7
6,546,513	-		PFLU_RS29485	0.41	+0.8
6,546,513	-		PFLU_RS29485	0.41	+0.8
6,546,513	-		PFLU_RS29485	0.41	+1.4
6,546,513	-		PFLU_RS29485	0.41	+0.0
6,546,693	+		PFLU_RS29485	0.90	-0.2
6,546,694	-				-0.9
6,546,694	-				-1.6
6,546,694	-				-0.5
6,546,694	-				+0.1
6,546,694	-				-0.3
6,546,703	+				+0.3
6,546,703	+				-0.2
6,546,703	+				+0.1
6,546,704	-				+0.1
6,546,704	-				-0.7
6,546,940	+		PFLU_RS29490	0.26	+1.0
6,546,940	+		PFLU_RS29490	0.26	-0.4
6,546,940	+		PFLU_RS29490	0.26	+0.1
6,546,941	-		PFLU_RS29490	0.26	-0.4
6,546,970	+		PFLU_RS29490	0.30	-1.1
6,546,970	+		PFLU_RS29490	0.30	-0.9
6,546,970	+		PFLU_RS29490	0.30	-1.1
6,546,970	+		PFLU_RS29490	0.30	-0.8
6,546,970	+		PFLU_RS29490	0.30	+0.3
6,546,970	+		PFLU_RS29490	0.30	-1.1
6,546,970	+		PFLU_RS29490	0.30	-0.1
6,546,970	+		PFLU_RS29490	0.30	+0.4
6,546,970	+		PFLU_RS29490	0.30	-0.3
6,546,970	+		PFLU_RS29490	0.30	-0.2
6,546,970	+		PFLU_RS29490	0.30	-0.1
6,546,970	+		PFLU_RS29490	0.30	+0.4
6,546,970	+		PFLU_RS29490	0.30	-0.6
6,546,970	+		PFLU_RS29490	0.30	+1.0
6,546,970	+		PFLU_RS29490	0.30	-0.3
6,546,971	-		PFLU_RS29490	0.30	+0.3
6,546,971	-		PFLU_RS29490	0.30	+0.6
6,546,971	-		PFLU_RS29490	0.30	-0.4
6,546,971	-		PFLU_RS29490	0.30	-0.3
6,546,971	-		PFLU_RS29490	0.30	+1.4
6,546,971	-		PFLU_RS29490	0.30	-0.3
6,546,971	-		PFLU_RS29490	0.30	+0.1
6,546,971	-		PFLU_RS29490	0.30	+1.1
6,546,971	-		PFLU_RS29490	0.30	-0.2
6,546,971	-		PFLU_RS29490	0.30	-1.2
6,546,971	-		PFLU_RS29490	0.30	-0.9
6,546,971	-		PFLU_RS29490	0.30	-0.0
6,546,971	-		PFLU_RS29490	0.30	+0.3
6,546,971	-		PFLU_RS29490	0.30	-0.6
6,546,971	-		PFLU_RS29490	0.30	-0.1
6,546,971	-		PFLU_RS29490	0.30	-1.0
6,546,971	-		PFLU_RS29490	0.30	-0.8
6,546,979	-		PFLU_RS29490	0.31	-2.1
6,546,979	-		PFLU_RS29490	0.31	-0.1
6,547,135	+		PFLU_RS29490	0.53	-2.0
6,547,135	+		PFLU_RS29490	0.53	-0.9
6,547,135	+		PFLU_RS29490	0.53	+0.7
6,547,135	+		PFLU_RS29490	0.53	-0.8
6,547,135	+		PFLU_RS29490	0.53	-1.6
6,547,136	-		PFLU_RS29490	0.53	+0.5
6,547,136	-		PFLU_RS29490	0.53	+1.2
6,547,136	-		PFLU_RS29490	0.53	-0.5
6,547,136	-		PFLU_RS29490	0.53	-0.0
6,547,136	-		PFLU_RS29490	0.53	-1.1
6,547,136	-		PFLU_RS29490	0.53	-0.4
6,547,253	+		PFLU_RS29490	0.69	+1.1
6,547,253	+		PFLU_RS29490	0.69	+0.1
6,547,253	+		PFLU_RS29490	0.69	-1.3
6,547,254	-		PFLU_RS29490	0.69	+0.4
6,547,285	+		PFLU_RS29490	0.74	+1.4