Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS09860

Experiment: malate (C) and Ammonium chloride (N); with TAPS; with PEG

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	malate (C) and Ammonium chloride (N); with TAPS; with PEG
2,168,989	-				+0.3
2,169,261	+		PFLU_RS09855	0.33	-2.6
2,169,262	-		PFLU_RS09855	0.33	-0.8
2,169,262	-		PFLU_RS09855	0.33	+0.9
2,169,262	-		PFLU_RS09855	0.33	+0.4
2,169,262	-		PFLU_RS09855	0.33	+1.1
2,169,262	-		PFLU_RS09855	0.33	-0.0
2,169,262	-		PFLU_RS09855	0.33	-0.6
2,169,262	-		PFLU_RS09855	0.33	+0.3
2,169,263	+		PFLU_RS09855	0.34	-1.8
2,169,340	-		PFLU_RS09855	0.42	-1.4
2,169,354	-		PFLU_RS09855	0.44	-1.0
2,169,354	-		PFLU_RS09855	0.44	-0.0
2,169,416	+		PFLU_RS09855	0.51	-3.1
2,169,417	-		PFLU_RS09855	0.51	-0.1
2,169,417	-		PFLU_RS09855	0.51	+0.1
2,169,417	-		PFLU_RS09855	0.51	-0.0
2,169,417	-		PFLU_RS09855	0.51	-0.6
2,169,478	+		PFLU_RS09855	0.58	-2.1
2,169,478	+		PFLU_RS09855	0.58	-1.7
2,169,479	-		PFLU_RS09855	0.58	-1.3
2,169,479	-		PFLU_RS09855	0.58	-1.6
2,169,479	-		PFLU_RS09855	0.58	-2.0
2,169,479	-		PFLU_RS09855	0.58	+0.4
2,169,479	-		PFLU_RS09855	0.58	-2.2
2,169,493	-		PFLU_RS09855	0.60	-2.0
2,169,493	-		PFLU_RS09855	0.60	-0.5
2,169,558	+		PFLU_RS09855	0.67	-4.3
2,169,558	+		PFLU_RS09855	0.67	-3.3
2,169,558	+		PFLU_RS09855	0.67	-2.8
2,169,558	+		PFLU_RS09855	0.67	-3.6
2,169,615	+		PFLU_RS09855	0.74	-2.8
2,169,615	+		PFLU_RS09855	0.74	-2.4
2,169,616	-		PFLU_RS09855	0.74	-1.9
2,169,616	-		PFLU_RS09855	0.74	-0.5
2,169,639	+		PFLU_RS09855	0.77	-4.0
2,169,639	+		PFLU_RS09855	0.77	-2.4
2,169,640	-		PFLU_RS09855	0.77	-3.5
2,169,711	+		PFLU_RS09855	0.85	-1.9
2,169,711	+		PFLU_RS09855	0.85	-3.7
2,169,711	+		PFLU_RS09855	0.85	-2.6
2,169,711	+		PFLU_RS09855	0.85	-2.8
2,169,711	+		PFLU_RS09855	0.85	-3.3
2,169,712	-		PFLU_RS09855	0.85	-0.2
2,169,712	-		PFLU_RS09855	0.85	-0.7
2,169,712	-		PFLU_RS09855	0.85	-1.9
2,169,712	-		PFLU_RS09855	0.85	-2.4
2,169,712	-		PFLU_RS09855	0.85	-2.0
2,169,712	-		PFLU_RS09855	0.85	-0.7
2,169,712	-		PFLU_RS09855	0.85	-1.0
2,169,712	-		PFLU_RS09855	0.85	-0.8
2,169,712	-		PFLU_RS09855	0.85	-1.1
2,169,712	-		PFLU_RS09855	0.85	-2.5
2,169,769	+				-2.5
2,169,823	+				-4.1
2,169,823	+				-2.5
2,169,823	+				-1.3
2,169,899	+				-1.8
2,169,899	+				-2.5
2,169,899	+				-2.3
2,169,899	+				-2.1
2,169,899	+				-2.8
2,169,900	-				+1.0
2,169,902	+				-2.5
2,169,902	+				-0.5
2,169,902	+				-1.5
2,169,903	-				-0.4
2,169,903	-				-0.3
2,169,903	-				+0.2
2,169,903	-				-2.0
2,169,941	+		PFLU_RS09860	0.10	-2.2
2,169,941	+		PFLU_RS09860	0.10	-1.6
2,170,172	+		PFLU_RS09860	0.34	-1.9
2,170,173	-		PFLU_RS09860	0.34	+0.6
2,170,173	-		PFLU_RS09860	0.34	+0.4
2,170,209	+		PFLU_RS09860	0.38	-1.2
2,170,210	-		PFLU_RS09860	0.38	-0.5
2,170,229	+		PFLU_RS09860	0.40	-3.0
2,170,229	+		PFLU_RS09860	0.40	-1.7
2,170,229	+		PFLU_RS09860	0.40	-3.0
2,170,229	+		PFLU_RS09860	0.40	-3.0
2,170,230	-		PFLU_RS09860	0.40	-0.1
2,170,230	-		PFLU_RS09860	0.40	-1.5
2,170,230	-		PFLU_RS09860	0.40	-0.4
2,170,230	-		PFLU_RS09860	0.40	+0.9
2,170,230	-		PFLU_RS09860	0.40	-0.2
2,170,230	-		PFLU_RS09860	0.40	-0.3
2,170,230	-		PFLU_RS09860	0.40	+0.3
2,170,394	+		PFLU_RS09860	0.57	-0.9
2,170,394	+		PFLU_RS09860	0.57	-2.8
2,170,394	+		PFLU_RS09860	0.57	-2.6
2,170,395	-		PFLU_RS09860	0.57	-0.7
2,170,395	-		PFLU_RS09860	0.57	-0.4
2,170,397	+		PFLU_RS09860	0.57	-3.5
2,170,397	+		PFLU_RS09860	0.57	-3.7
2,170,397	+		PFLU_RS09860	0.57	-2.0
2,170,397	+		PFLU_RS09860	0.57	-3.8
2,170,398	-		PFLU_RS09860	0.57	-0.4
2,170,398	-		PFLU_RS09860	0.57	+2.0
2,170,398	-		PFLU_RS09860	0.57	-0.6
2,170,398	-		PFLU_RS09860	0.57	-1.4
2,170,769	+				-2.1
2,170,769	+				-2.8
2,170,769	+				-3.3
2,170,769	+				-2.1
2,170,769	+				-3.8
2,170,769	+				-2.0
2,170,770	-				-0.7
2,170,770	-				-3.4
2,170,770	-				-1.5
2,170,772	-				-3.2
2,170,843	+				-2.3
2,170,844	-				-2.9
2,171,051	+				-2.0
2,171,052	-				-1.3
2,171,052	-				-0.9
2,171,052	-				-0.4
2,171,052	-				-0.3
2,171,052	-				-0.2
2,171,052	-				-0.6
2,171,084	+		PFLU_RS09865	0.12	-2.2
2,171,085	-		PFLU_RS09865	0.12	-1.2
2,171,085	-		PFLU_RS09865	0.12	+1.3
2,171,132	+		PFLU_RS09865	0.16	-2.8
2,171,264	+		PFLU_RS09865	0.26	-1.7
2,171,264	+		PFLU_RS09865	0.26	-2.6
2,171,264	+		PFLU_RS09865	0.26	-1.3
2,171,264	+		PFLU_RS09865	0.26	-2.5
2,171,264	+		PFLU_RS09865	0.26	-1.7
2,171,264	+		PFLU_RS09865	0.26	-2.5
2,171,264	+		PFLU_RS09865	0.26	-2.4
2,171,264	+		PFLU_RS09865	0.26	-3.9
2,171,264	+		PFLU_RS09865	0.26	-3.1
2,171,264	+		PFLU_RS09865	0.26	-3.1
2,171,264	+		PFLU_RS09865	0.26	-2.0
2,171,264	+		PFLU_RS09865	0.26	-2.9
2,171,264	+		PFLU_RS09865	0.26	-3.8
2,171,264	+		PFLU_RS09865	0.26	-2.3
2,171,265	-		PFLU_RS09865	0.26	-1.8
2,171,265	-		PFLU_RS09865	0.26	-1.1
2,171,265	-		PFLU_RS09865	0.26	-1.3
2,171,265	-		PFLU_RS09865	0.26	-1.4
2,171,265	-		PFLU_RS09865	0.26	-0.7
2,171,265	-		PFLU_RS09865	0.26	-0.4
2,171,265	-		PFLU_RS09865	0.26	-1.2
2,171,265	-		PFLU_RS09865	0.26	-0.5
2,171,267	+		PFLU_RS09865	0.26	-1.7
2,171,267	+		PFLU_RS09865	0.26	-3.6
2,171,267	+		PFLU_RS09865	0.26	-2.0
2,171,268	-		PFLU_RS09865	0.26	-1.6
2,171,268	-		PFLU_RS09865	0.26	+0.3
2,171,268	-		PFLU_RS09865	0.26	-0.3
2,171,274	+		PFLU_RS09865	0.26	-3.0
2,171,275	-		PFLU_RS09865	0.26	-0.7
2,171,316	-		PFLU_RS09865	0.30	-2.1
2,171,360	+		PFLU_RS09865	0.33	-3.3
2,171,360	+		PFLU_RS09865	0.33	-2.2
2,171,361	-		PFLU_RS09865	0.33	-1.4
2,171,361	-		PFLU_RS09865	0.33	-0.2
2,171,361	-		PFLU_RS09865	0.33	-2.5
2,171,433	-		PFLU_RS09865	0.38	-1.7
2,171,555	+		PFLU_RS09865	0.48	-2.9
2,171,555	+		PFLU_RS09865	0.48	-3.5
2,171,555	+		PFLU_RS09865	0.48	-2.8
2,171,555	+		PFLU_RS09865	0.48	-3.0
2,171,555	+		PFLU_RS09865	0.48	-3.8
2,171,555	+		PFLU_RS09865	0.48	+1.6
2,171,555	+		PFLU_RS09865	0.48	-2.4
2,171,555	+		PFLU_RS09865	0.48	-4.3
2,171,555	+		PFLU_RS09865	0.48	-2.5
2,171,555	+		PFLU_RS09865	0.48	-1.6
2,171,555	+		PFLU_RS09865	0.48	-1.5
2,171,555	+		PFLU_RS09865	0.48	-2.1
2,171,556	-		PFLU_RS09865	0.48	+1.6
2,171,556	-		PFLU_RS09865	0.48	-0.8
2,171,556	-		PFLU_RS09865	0.48	-2.0
2,171,556	-		PFLU_RS09865	0.48	-0.6
2,171,556	-		PFLU_RS09865	0.48	-0.2
2,171,556	-		PFLU_RS09865	0.48	-0.9
2,171,595	-		PFLU_RS09865	0.51	-1.2
2,171,595	-		PFLU_RS09865	0.51	-0.9
2,171,614	+		PFLU_RS09865	0.52	-1.2
2,171,615	-		PFLU_RS09865	0.52	-2.3
2,171,628	-		PFLU_RS09865	0.53	-2.0
2,171,660	+		PFLU_RS09865	0.56	-4.1
2,171,676	+		PFLU_RS09865	0.57	-2.0
2,171,676	+		PFLU_RS09865	0.57	-4.1
2,171,680	+		PFLU_RS09865	0.57	-3.0
2,171,680	+		PFLU_RS09865	0.57	-3.0
2,171,681	-		PFLU_RS09865	0.57	-2.0
2,171,699	+		PFLU_RS09865	0.59	-3.4
2,171,699	+		PFLU_RS09865	0.59	-1.8
2,171,699	+		PFLU_RS09865	0.59	-2.7
2,171,699	+		PFLU_RS09865	0.59	-1.7
2,171,700	-		PFLU_RS09865	0.59	-3.0
2,171,700	-		PFLU_RS09865	0.59	-2.9
2,171,700	-		PFLU_RS09865	0.59	-2.6
2,171,700	-		PFLU_RS09865	0.59	-3.3
2,171,763	+		PFLU_RS09865	0.63	-2.1
2,171,763	+		PFLU_RS09865	0.63	-3.6
2,171,764	-		PFLU_RS09865	0.63	-1.2